Miyakogusa Predicted Gene
- Lj5g3v1262950.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
B2CP01_LOTJA |
765 |
100.0 |
100.0 |
(tr|B2CP01) Granule bound starch synthase Ia OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT1G32900.1 |
619 |
78.1 |
88.8 |
| Symbols: | UDP-Glycosyltransferase superfamily protein | chr1:11920582-11923506 REVERSE LENGTH=610 |
| Medicago |
Medtr1g078000.2 |
696 |
89.9 |
95.9 |
| granule bound starch synthase I, putative | HC | chr1:34876696-34871897 | 20130731 |
| Soybean |
Glyma20g36040.1 |
704 |
90.4 |
97.0 |
|
| LJGI |
gnl|LJGI|TC61354 |
1346 |
100.0 |
100.0 |
similar to UniRef100_Q9ZSQ5 Cluster: Granule-bound glycogen (Starch) synthase; n=1; Astragalus membranaceus|Rep: Granule-bound glycogen (Starch) synthase - Astragalus membranaceus (Chinese milk-vetch) (Huang qi), partial (59%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v1262950.2 |
length: 367 aa. |
| IPR001296 |
Glycosyl transferase, family 1 |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0009058 |
biosynthetic process |
|
|
| HMMPfam |
PF00534 |
Glycos_transf_1 |
1.6e-19 |
233-359 |
| IPR011835 |
Glycogen/starch synthase, ADP-glucose type |
| Molecular Function |
GO:0009011 |
starch synthase activity |
|
|
| Biological Process |
GO:0009250 |
glucan biosynthetic process |
|
|
| HMMTigr |
TIGR02095 |
glgA: |
8.7e-116 |
10-366 |
| IPR013534 |
Starch synthase, catalytic domain |
| HMMPfam |
PF08323 |
Glyco_transf_5 |
8.9e-46 |
12-177 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.2000 |
no description |
1e-65 |
188-356 |
| HMMPanther |
PTHR12526 |
GLYCOSYLTRANSFERASE |
4.3e-107 |
22-352 |
| HMMPanther |
PTHR12526:SF17 |
STARCH |
4.3e-107 |
22-352 |
| superfamily |
SSF53756 |
UDP-Glycosyltransferase/glycogen |
9e-88 |
11-360 |
- Wolf-PSORT
Lj5g3v1262950.2 cyto 8, nucl 3, chlo 1, mito 1, cysk 1, chlo_mito 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v1262950.2 |
Not targeted |
-57.243 |
-0.501 |
-1.814 |
85.53% |
-54.928
|