| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | G7L565_MEDTR | 358 | 69.7 | 84.8 | (tr|G7L565) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_7g012890 PE=4 SV=1 |
| TAIR_pep | AT3G22470.1 | 192 | 39.3 | 62.4 | | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:7966066-7967925 REVERSE LENGTH=619 |
| Medicago | Medtr0308s0020.1 | 365 | 68.9 | 85.7 | | pentatricopeptide (PPR) repeat protein | LC | scaffold0308:7816-9441 | 20130731 |
| Soybean | Glyma09g30620.1 | 346 | 66.0 | 82.8 | |
| LJGI | gnl|LJGI|BP047039 | 396 | 100.0 | 100.0 | weakly similar to UniRef100_Q1SMZ4 Cluster: Tetratricopeptide-like helical; n=1; Medicago truncatula|Rep: Tetratricopeptide-like helical - Medicago truncatula (Barrel medic), partial (9%) |
| Lj5g3v1225680.1 | length: 244 aa. | |||
| IPR002885 | Pentatricopeptide repeat | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| HMMPfam | PF01535 | PPR | 0.0015 | 120-150 |
| HMMPfam | PF12854 | PPR_1 | 1.9e-12 | 8-40 |
| HMMPfam | PF13041 | PPR_2 | 1.2e-17 | 47-96 152-201 |
| HMMTigr | TIGR00756 | PPR: | 2.9e-11 | 15-49 51-84 85-115 120-153 155-188 191-222 |
| ProfileScan | PS51375 | PPR | 6.654 | 13-47 48-82 83-117 118-152 153-187 188-222 223-244 |
| IPR011990 | Tetratricopeptide-like helical | |||
| Molecular Function | GO:0005515 | protein binding | ||
| Gene3D | G3DSA:1.25.40.10 | no description | 0.00032 | 14-214 |
| no_ID | ||||
| HMMPanther | PTHR24015 | FAMILY | 7.9e-85 | 5-244 |
| HMMPanther | PTHR24015:SF0 | SUBFAMILY | 7.9e-85 | 5-244 |
Lj5g3v1225680.1 extr 5, mito 2.5, mito_plas 2.5, chlo 2, cyto 2, plas 1.5, cyto_pero 1.5
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| Lj5g3v1225680.1 | Not targeted | -65.827 | -0.008 | -24.935 | 93.63% | -40.884 |