Miyakogusa Predicted Gene

Lj5g3v1097080.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LYM1_SOYBN 1632 77.2 83.6 (tr|I1LYM1) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G18760.1 1270 63.7 72.6 | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129154-8133502 FORWARD LENGTH=1187
Medicago Medtr1g069755.1 1604 74.9 82.0 | DNA repair and recombination protein RAD26 | HC | chr1:30420894-30427365 | 20130731
Soybean Glyma13g18650.1 1632 77.2 83.6  
LJGI gnl|LJGI|TC64434 797 99.8 99.8 similar to UniRef100_A7Q1R2 Cluster: Chromosome chr7 scaffold_44, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_44, whole genome shotgun sequence - Vitis vinifera (Grape), partial (7%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v1097080.1 length: 1040 aa.
IPR000330 SNF2-related
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00176 SNF2_N 8.4e-69 186-536
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 1.6e-13 590-668
HMMSmart SM00490 helicase 6.9e-20 585-668
ProfileScan PS51194 HELICASE_CTER 18.650 559-718
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 1.4e-28 179-411
ProfileScan PS51192 HELICASE_ATP_BIND_1 19.035 195-394
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.4e-66 474-721
172-439
no_ID  
Coil coil coiled-coil NA 831-852
Gene3D G3DSA:3.40.50.300 no description 8.9e-21 315-391
552-690
HMMPanther PTHR10799 SWI/SNF-RELATED 0 1-855
HMMPanther PTHR10799:SF254SUBFAMILY NOT 0 1-855
Seg seg seg NA 276-299
786-797
913-930
987-997
Wolf-PSORT
Lj5g3v1097080.1	chlo 5, nucl 4, cyto 4, cyto_nucl 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v1097080.1