Miyakogusa Predicted Gene

Lj5g3v1015190.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr5

Full length sequence(34192293 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL C6T9A5_SOYBN 272 76.7 80.3 (tr|C6T9A5) Putative uncharacterized protein OS=Glycine max PE=2 SV=1

TAIR_pep AT4G14550.1 195 70.0 82.1 | Symbols: IAA14, SLR | indole-3-acetic acid inducible 14 | chr4:8348521-8349923 REVERSE LENGTH=228

Medicago Medtr1g070520.1 241 69.0 73.6 | auxin-responsive AUX/IAA family protein | HC | chr1:31340838-31337022 | 20130731

Soybean Glyma10g03720.1 266 75.1 78.8

LJGI gnl|LJGI|TC58187 1142 100.0 100.0 similar to UniRef100_P13089 Cluster: Auxin-induced protein AUX28; n=1; Glycine max|Rep: Auxin-induced protein AUX28 - Glycine max (Soybean), partial (87%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj5g3v1015190.1 length: 192 aa.

IPR003311 AUX/IAA protein

method AccNumber shortName E-value location

Cellular Component GO:0005634 nucleus

Biological Process GO:0006355 regulation of transcription, DNA-dependent

HMMPfam PF02309 AUX_IAA 2.4e-63 2-192

IPR011525 Aux/IAA-ARF-dimerisation

Molecular Function GO:0046983 protein dimerization activity

ProfileScan PS50962 IAA_ARF 24.850 108-192

no_ID

HMMPanther PTHR31734 FAMILY 2.7e-74 1-192

Seg seg seg NA 7-21
33-43

superfamily SSF54277 CAD 2.7e-18 95-192

Wolf-PSORT

Lj5g3v1015190.1 nucl 5, cyto 4, chlo 3, mito 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj5g3v1015190.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	C6T9A5_SOYBN	272	76.7	80.3	(tr\|C6T9A5) Putative uncharacterized protein OS=Glycine max PE=2 SV=1
TAIR_pep	AT4G14550.1	195	70.0	82.1	\| Symbols: IAA14, SLR \| indole-3-acetic acid inducible 14 \| chr4:8348521-8349923 REVERSE LENGTH=228
Medicago	Medtr1g070520.1	241	69.0	73.6	\| auxin-responsive AUX/IAA family protein \| HC \| chr1:31340838-31337022 \| 20130731
Soybean	Glyma10g03720.1	266	75.1	78.8
LJGI	gnl\|LJGI\|TC58187	1142	100.0	100.0	similar to UniRef100_P13089 Cluster: Auxin-induced protein AUX28; n=1; Glycine max\|Rep: Auxin-induced protein AUX28 - Glycine max (Soybean), partial (87%)

IPR003311	AUX/IAA protein
Lj5g3v1015190.1				length: 192 aa.
method	AccNumber	shortName	E-value	location
Cellular Component	GO:0005634	nucleus
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
HMMPfam	PF02309	AUX_IAA	2.4e-63	2-192
IPR011525	Aux/IAA-ARF-dimerisation
Molecular Function	GO:0046983	protein dimerization activity
ProfileScan	PS50962	IAA_ARF	24.850	108-192
no_ID
HMMPanther	PTHR31734	FAMILY	2.7e-74	1-192
Seg	seg	seg	NA	7-21 33-43
superfamily	SSF54277	CAD	2.7e-18	95-192