Miyakogusa Predicted Gene
- Lj5g3v0998840.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
B9GSK1_POPTR |
601 |
77.0 |
85.7 |
(tr|B9GSK1) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_798547 PE=4 SV=1 |
| TAIR_pep |
AT3G63270.1 |
535 |
68.8 |
80.4 |
| Symbols: | CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:23375932-23377398 REVERSE LENGTH=396 |
| Medicago |
--No_Hits--
|
|
|
|
|
| Soybean |
Glyma20g23150.2 |
343 |
47.4 |
65.2 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v0998840.1 |
length: 394 aa. |
| IPR026103 |
Harbinger transposase-derived nuclease |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR22930 |
UNCHARACTERIZED |
6.5e-84 |
59-392 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
4-25 |
| HMMPfam |
PF13359 |
DDE_4 |
3.9e-24 |
180-344 |
| Seg |
seg |
seg |
NA |
6-22 |
- Wolf-PSORT
Lj5g3v0998840.1 nucl 9, mito 2, plas 1.5, chlo_mito 1.5, golg_plas 1.5
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v0998840.1 |
|