Miyakogusa Predicted Gene

Lj5g3v0977410.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IEB8_MEDTR 301 85.8 93.8 (tr|G7IEB8) Uncharacterized protein OS=Medicago truncatula GN=MTR_1g072140 PE=2 SV=1
TAIR_pep AT4G02730.1 262 71.0 88.9 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:1207759-1209066 FORWARD LENGTH=333
Medicago Medtr1g072140.1 301 85.8 93.8 | transducin/WD40 repeat protein | HC | chr1:32005480-32003360 | 20130731
Soybean Glyma02g16570.1 300 86.4 93.2  
LJGI gnl|LJGI|TC66509 981 100.0 100.0 similar to UniRef100_A7PUB2 Cluster: Chromosome chr7 scaffold_31, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_31, whole genome shotgun sequence - Vitis vinifera (Grape), partial (96%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v0977410.1 length: 163 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 1.4e-08 2-28
45-71
75-116
123-159
HMMSmart SM00320 WD40 8.8e-05 2-28
31-71
74-116
119-160
ProfileScan PS50082 WD_REPEATS_2 12.012 1-37
39-80
81-125
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1e-43 2-159
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 32.694 1-163
superfamily SSF50978 WD40 1.3e-41 1-159
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 15-29
103-117
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 1e-05 15-29
58-72
103-117
no_ID  
HMMPanther PTHR22847 WD40 1.8e-103 1-159
HMMPanther PTHR22847:SF123ADR108CP T[1-159] 1.8e-103  
Wolf-PSORT
Lj5g3v0977410.1	cyto 6, extr 4, chlo 2, nucl 1, golg 1, chlo_mito 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v0977410.1