Miyakogusa Predicted Gene
- Lj5g3v0975900.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3T9W4_LOTJA |
295 |
100.0 |
100.0 |
(tr|I3T9W4) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT3G59600.1 |
195 |
64.8 |
83.8 |
| Symbols: NRPB8B, NRPD8B, NRPE8B | RNA polymerase Rpb8 | chr3:22016629-22017923 FORWARD LENGTH=146 |
| Medicago |
Medtr1g056890.2 |
261 |
86.9 |
95.2 |
| DNA-directed RNA polymerase I, II | HC | chr1:24915813-24911971 | 20130731 |
| Soybean |
Glyma02g26790.5 |
260 |
87.9 |
96.4 |
|
| LJGI |
gnl|LJGI|TC59182 |
862 |
100.0 |
100.0 |
weakly similar to UniRef100_Q9AXJ3 Cluster: RNA polymerase I, II and III subunit RPB8; n=2; Manihot esculenta|Rep: RNA polymerase I, II and III subunit RPB8 - Manihot esculenta (Cassava) (Manioc), partial (93%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v0975900.2 |
length: 144 aa. |
| IPR005570 |
RNA polymerase, Rpb8 |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0006351 |
transcription, DNA-dependent |
|
|
| HMMPIR |
PIRSF000779 |
DNA-directed |
1e-62 |
1-144 |
| HMMPanther |
PTHR10917 |
DNA-DIRECTED |
2.1e-65 |
1-144 |
| HMMPfam |
PF03870 |
RNA_pol_Rpb8 |
4.4e-49 |
7-143 |
| HMMSmart |
SM00658 |
RNA |
2.3e-64 |
2-143 |
| IPR012340 |
Nucleic acid-binding, OB-fold |
| Gene3D |
G3DSA:2.40.50.140 |
no description |
2.3e-47 |
2-143 |
| superfamily |
SSF50249 |
Nucleic |
3.2e-44 |
2-143 |
| no_ID |
|
| HMMPanther |
PTHR10917:SF0 |
DNA-DIRECTED |
2.1e-65 |
1-144 |
- Wolf-PSORT
Lj5g3v0975900.2 cyto 8.5, cyto_E.R. 5, chlo 2, nucl 1, extr 1, cysk 1, chlo_mito 1, cysk_nucl 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v0975900.2 |
|