Miyakogusa Predicted Gene

Lj5g3v0921030.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N979_SOYBN 268 52.1 58.0 (tr|I1N979) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G12130.1 219 49.2 58.1 | Symbols: | KH domain-containing protein / zinc finger (CCCH type) family protein | chr3:3864486-3866406 REVERSE LENGTH=248
Medicago Medtr1g053960.1 247 47.1 55.2 | zinc finger C-x8-C-x5-C-x3-H type family protein | HC | chr1:22947319-22950793 | 20130731
Soybean Glyma19g32910.1 268 52.1 58.0  
LJGI gnl|LJGI|TC67654 147 83.2 83.2 similar to UniRef100_A7PVV6 Cluster: Chromosome chr8 scaffold_34, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_34, whole genome shotgun sequence - Vitis vinifera (Grape), partial (81%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v0921030.1 length: 257 aa.
IPR000571 Zinc finger, CCCH-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
Gene3D G3DSA:4.10.1000.10 no description 7.3e-14 34-58
221-254
HMMPfam PF00642 zf-CCCH 7.5e-10 224-248
HMMSmart SM00356 zinc 1.3e-07 32-59
223-249
ProfileScan PS50103 ZF_C3H1 16.408 32-60
223-250
IPR004087 K Homology domain
Molecular Function GO:0003723 RNA binding    
HMMSmart SM00322 K 3.2e-11 118-188
IPR004088 K Homology domain, type 1
Molecular Function GO:0003723 RNA binding    
HMMPfam PF00013 KH_1 9.2e-12 122-182
ProfileScan PS50084 KH_TYPE_1 14.571 119-183
no_ID  
Gene3D G3DSA:3.30.1370.10 no description 4.8e-15 119-187
HMMPanther PTHR10288 KH 2.5e-90 15-254
HMMPanther PTHR10288:SF5 ZINC 2.5e-90 15-254
Seg seg seg NA 93-104
118-131
superfamily SSF54791 Eukaryotic 6.9e-18 106-204
superfamily SSF90229 CCCH 2e-05 218-256
27-66
Wolf-PSORT
Lj5g3v0921030.1	nucl 12, chlo 1, cyto 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v0921030.1 Twilight zone -0.164 -0.155 -0.350 0.64% 0.341