Miyakogusa Predicted Gene
- Lj5g3v0900910.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7LD83_SOYBN |
543 |
68.7 |
77.3 |
(tr|K7LD83) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT5G06800.1 |
223 |
63.8 |
74.6 |
| Symbols: | myb-like HTH transcriptional regulator family protein | chr5:2103374-2105680 FORWARD LENGTH=375 |
| Medicago |
Medtr1g053835.1 |
512 |
65.0 |
75.3 |
| myb-like transcription factor family protein | HC | chr1:22815733-22812167 | 20130731 |
| Soybean |
Glyma02g30800.1 |
513 |
67.0 |
75.7 |
|
| LJGI |
gnl|LJGI|TC77486 |
505 |
100.0 |
100.0 |
similar to UniRef100_A7PVU7 Cluster: Chromosome chr8 scaffold_34, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_34, whole genome shotgun sequence - Vitis vinifera (Grape), partial (10%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v0900910.1 |
length: 420 aa. |
| IPR001005 |
SANT/Myb domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003682 |
chromatin binding |
|
|
| HMMPfam |
PF00249 |
Myb_DNA-binding |
2.6e-12 |
250-299 |
| IPR006447 |
Myb domain, plants |
| HMMTigr |
TIGR01557 |
myb_SHAQKYF: |
7.3e-23 |
246-301 |
| IPR009057 |
Homeodomain-like |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Gene3D |
G3DSA:1.10.10.60 |
no description |
7.8e-27 |
244-301 |
| superfamily |
SSF46689 |
Homeodomain-like |
1.7e-15 |
242-299 |
| IPR025756 |
MYB-CC type transcription factor, LHEQLE-containing domain |
| HMMPfam |
PF14379 |
Myb_CC_LHEQLE |
2.7e-19 |
329-378 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
333-354 |
| HMMPanther |
PTHR31314 |
FAMILY |
9.9e-83 |
216-381 |
- Wolf-PSORT
Lj5g3v0900910.1 nucl 9, cyto 2, chlo 1, extr 1, vacu 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v0900910.1 |
|