Miyakogusa Predicted Gene

Lj5g3v0878420.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A2Q6E2_MEDTR 676 91.3 93.5 (tr|A2Q6E2) Cryptochrome OS=Medicago truncatula GN=MTR_5g063920 PE=4 SV=1
TAIR_pep AT4G08920.1 615 84.5 90.2 | Symbols: CRY1, BLU1, HY4, OOP2, ATCRY1 | cryptochrome 1 | chr4:5724260-5726905 FORWARD LENGTH=681
Medicago Medtr5g063920.2 676 91.3 93.5 | cryptochrome protein | HC | chr5:26511516-26517722 | 20130731
Soybean Glyma13g01810.2 671 91.0 93.3  
LJGI gnl|LJGI|TC72840 1707 99.7 99.7 homologue to UniRef100_A2Q6E2 Cluster: Deoxyribodipyrimidine photolyase, class 1; n=1; Medicago truncatula|Rep: Deoxyribodipyrimidine photolyase, class 1 - Medicago truncatula (Barrel medic), partial (43%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v0878420.1 length: 365 aa.
IPR002081 Cryptochrome/DNA photolyase, class 1
method AccNumber shortName E-value location
Molecular Function GO:0003913 DNA photolyase activity    
Biological Process GO:0006281 DNA repair    
FPrintScan PR00147 DNAPHOTLYASE 9.2e-10 144-160
333-349
353-365
IPR005101 DNA photolyase, FAD-binding/Cryptochrome, C-terminal
Molecular Function GO:0003913 DNA photolyase activity    
Biological Process GO:0006281 DNA repair    
HMMPfam PF03441 FAD_binding_7 1.9e-39 209-365
superfamily SSF48173 Cryptochrome/photolyase 7.9e-50 192-365
IPR006050 DNA photolyase, N-terminal
HMMPfam PF00875 DNA_photolyase 9.9e-42 8-165
ProfileScan PS51645 PHR_CRY_ALPHA_BETA 34.412 6-135
superfamily SSF52425 Cryptochrome/photolyase, 8.7e-48 8-179
IPR014134 Cryptochrome, plant
HMMTigr TIGR02766 crypt_chrom_pln: 2.2e-204 7-365
IPR014729 Rossmann-like alpha/beta/alpha sandwich fold
Gene3D G3DSA:3.40.50.620 no description 6.5e-47 6-166
IPR018394 Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal
Molecular Function GO:0003913 DNA photolyase activity    
Biological Process GO:0006281 DNA repair    
PatternScan PS00394 DNA_PHOTOLYASES_1_1 NA 333-345
no_ID  
Gene3D G3DSA:1.10.579.10 no description 2.5e-19 293-365
Gene3D G3DSA:1.25.40.80 no description 3.5e-25 206-292
HMMPanther PTHR11455 CRYPTOCHROME 3.6e-118 5-365
Seg seg seg NA 23-36
Wolf-PSORT
Lj5g3v0878420.1	chlo 5, extr 2, vacu 2, E.R. 2, E.R._vacu 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v0878420.1