Miyakogusa Predicted Gene

Lj5g3v0868360.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JGD6_SOYBN 735 67.1 70.7 (tr|I1JGD6) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G41500.1 570 62.0 73.3 | Symbols: LIS, EMB2776 | WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related | chr2:17304319-17306855 REVERSE LENGTH=554
Medicago Medtr5g022690.1 657 69.1 74.0 | U4/U6 small nuclear ribonucleoprotein PRP4 | HC | chr5:8972619-8969829 | 20130731
Soybean Glyma02g34620.1 735 67.1 70.7  
LJGI gnl|LJGI|TC73610 948 100.0 100.0 homologue to UniRef100_A7PVR8 Cluster: Chromosome chr8 scaffold_34, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_34, whole genome shotgun sequence - Vitis vinifera (Grape), partial (11%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v0868360.1 length: 570 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 2.3e-10 276-304
311-346
350-387
398-429
437-471
476-514
519-556
HMMSmart SM00320 WD40 3.6e-10 263-304
307-346
348-387
390-429
432-471
474-514
517-556
ProfileScan PS50082 WD_REPEATS_2 13.316 314-346
355-396
397-438
439-480
481-523
524-556
IPR003648 Splicing factor motif
Biological Process GO:0008380 RNA splicing    
HMMSmart SM00500 Splicing 1.1e-15 139-192
IPR014906 Pre-mRNA processing factor 4 (PRP4)-like
HMMPfam PF08799 PRP4 1.6e-12 144-173
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.6e-88 274-558
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 63.776 272-565
superfamily SSF50978 WD40 3.8e-84 273-556
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 374-388
416-430
458-472
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 6.3e-06 374-388
458-472
501-515
IPR027106 U4/U6 small nuclear ribonucleoprotein Prp4/ASTRA-associated protein 1
HMMPanther PTHR19846 WD40 1.6e-207 47-570
no_ID  
Coil coil coiled-coil NA 175-196
Seg seg seg NA 26-77
84-95
107-136
160-173
230-255
Wolf-PSORT
Lj5g3v0868360.1	cyto 7, nucl 3, chlo 1, plas 1, golg 1, golg_plas 1, E.R._vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v0868360.1