Miyakogusa Predicted Gene

Lj5g3v0868340.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7K9G6_SOYBN 879 77.8 85.5 (tr|K7K9G6) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G41460.1 582 61.6 75.3 | Symbols: ARP | apurinic endonuclease-redox protein | chr2:17285731-17288769 FORWARD LENGTH=536
Medicago Medtr1g051380.2 815 74.9 83.2 | apurinic endonuclease-redox protein | HC | chr1:20157979-20150935 | 20130731
Soybean Glyma02g34700.1 812 77.0 84.6  
LJGI gnl|LJGI|TC62223 1334 100.0 100.0 weakly similar to UniRef100_P93291 Cluster: Uncharacterized mitochondrial protein AtMg00260; n=1; Arabidopsis thaliana|Rep: Uncharacterized mitochondrial protein AtMg00260 - Arabidopsis thaliana (Mouse-ear cress), partial (19%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v0868340.1 length: 544 aa.
IPR003034 SAP domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:1.10.720.30 no description 0.00089 102-134
HMMPfam PF02037 SAP 2.5e-06 101-133
HMMSmart SM00513 Putative 5e-07 100-134
ProfileScan PS50800 SAP 9.487 100-134
IPR004808 Exodeoxyribonuclease III xth
Molecular Function GO:0004518 nuclease activity    
Biological Process GO:0006281 DNA repair    
HMMPanther PTHR22748 AP 8.3e-125 232-544
HMMTigr TIGR00633 xth: 2.4e-94 284-542
ProfileScan PS51435 AP_NUCLEASE_F1_4 53.641 284-544
IPR005135 Endonuclease/exonuclease/phosphatase
Gene3D G3DSA:3.60.10.10 no description 5.1e-92 278-543
HMMPfam PF03372 Exo_endo_phos 4.2e-25 287-535
superfamily SSF56219 DNase 6.2e-68 284-544
IPR020847 AP endonuclease, family 1, binding site
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0004519 endonuclease activity    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0006281 DNA repair    
PatternScan PS00726 AP_NUCLEASE_F1_1 NA 314-323
IPR020848 AP endonuclease, family 1, conserved site
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0004519 endonuclease activity    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0006281 DNA repair    
PatternScan PS00728 AP_NUCLEASE_F1_3 NA 503-514
no_ID  
HMMPanther PTHR22748:SF0 SUBFAMILY 8.3e-125 232-544
HMMTigr TIGR00195 exoDNase_III: 5.2e-77 285-542
Seg seg seg NA 196-213
226-239
superfamily SSF68906 SAP 1e-06 86-136
Wolf-PSORT
Lj5g3v0868340.1	chlo 9, nucl 2, plas 1, E.R. 1, pero 1, cyto_nucl 1, cysk_nucl 1, E.R._plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v0868340.1