Miyakogusa Predicted Gene

Lj5g3v0840940.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1L9L1_SOYBN 1663 78.8 84.2 (tr|I1L9L1) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT2G35920.1 1405 70.2 82.8 | Symbols: | RNA helicase family protein | chr2:15075674-15080506 FORWARD LENGTH=995
Medicago Medtr1g056490.1 1581 77.6 82.6 | ATP-dependent RNA helicase | HC | chr1:24729204-24739293 | 20130731
Soybean Glyma10g10180.1 1642 76.7 82.0  
LJGI gnl|LJGI|TC69175 313 98.8 98.8 similar to UniRef100_A7QQX0 Cluster: Chromosome undetermined scaffold_145, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_145, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v0840940.2 length: 1030 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 3.6e-14 568-655
HMMSmart SM00490 helicase 5.6e-20 547-656
ProfileScan PS51194 HELICASE_CTER 16.509 522-696
IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
PatternScan PS00690 DEAH_ATP_HELICASE NA 381-390
IPR007502 Helicase-associated domain
Molecular Function GO:0004386 helicase activity    
HMMPfam PF04408 HA2 1.7e-24 718-809
HMMSmart SM00847 Helicase 5.7e-33 718-809
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 2.1e-05 269-424
IPR011709 Domain of unknown function DUF1605
HMMPfam PF07717 OB_NTP_bind 4.6e-17 847-958
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 2.3e-27 260-453
ProfileScan PS51192 HELICASE_ATP_BIND_1 18.808 272-439
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 6.1e-77 256-845
no_ID  
Coil coil coiled-coil NA 980-1001
Gene3D G3DSA:3.40.50.300 no description 1.4e-10 261-422
530-682
HMMPanther PTHR18934 ATP-DEPENDENT 0 81-1005
HMMPanther PTHR18934:SF68 SUBFAMILY 0 81-1005
Seg seg seg NA 46-74
230-245
320-333
398-415
472-484
645-659
Wolf-PSORT
Lj5g3v0840940.2	chlo 11, nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v0840940.2 Not targeted -63.478 -1.648 -9.068 91.89% -52.761