Miyakogusa Predicted Gene
- Lj5g3v0659640.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
F6I672_VITVI |
84.0 |
37.1 |
51.0 |
(tr|F6I672) Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01790 PE=4 SV=1 |
| TAIR_pep |
AT4G11400.1 |
52.0 |
35.1 |
60.8 |
| Symbols: | ARID/BRIGHT DNA-binding domain;ELM2 domain protein | chr4:6938717-6940539 FORWARD LENGTH=573 |
| Medicago |
Medtr7g078120.1 |
75.1 |
57.8 |
71.9 |
| AT-rich interactive domain protein | HC | chr7:29536336-29530632 | 20130731 |
| Soybean |
Glyma07g07530.1 |
104 |
52.7 |
61.8 |
|
| LJGI |
gnl|LJGI|FS329136 |
123 |
82.7 |
82.7 |
weakly similar to UniRef100_Q2HUC6 Cluster: ELM2; AT-rich interaction region; Homeodomain-related; n=1; Medicago truncatula|Rep: ELM2; AT-rich interaction region; Homeodomain-related - Medicago truncatula (Barrel medic), partial (12%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v0659640.1 |
length: 175 aa. |
| IPR001606 |
ARID/BRIGHT DNA-binding domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Cellular Component |
GO:0005622 |
intracellular |
|
|
| Gene3D |
G3DSA:1.10.150.60 |
no description |
7.2e-13 |
34-125 |
| HMMPfam |
PF01388 |
ARID |
1.3e-10 |
30-112 |
| HMMSmart |
SM00501 |
BRIGHT, |
3e-13 |
26-119 |
| ProfileScan |
PS51011 |
ARID |
16.081 |
25-118 |
| superfamily |
SSF46774 |
ARID-like |
1e-15 |
28-132 |
| no_ID |
|
| HMMSmart |
SM01014 |
ARID/BRIGHT |
5.8e-11 |
25-114 |
| Seg |
seg |
seg |
NA |
43-58 |
- Wolf-PSORT
Lj5g3v0659640.1 chlo 4, nucl 4, cyto 3, extr 2, chlo_mito 2, cysk_nucl 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v0659640.1 |
|