Miyakogusa Predicted Gene

Lj5g3v0659340.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LZ84_SOYBN 791 68.3 79.3 (tr|I1LZ84) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT2G36990.1 485 47.2 62.5 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | RNApolymerase sigma-subunit F | chr2:15537502-15540016 REVERSE LENGTH=547
Medicago Medtr1g063850.1 768 66.3 79.1 | RNA polymerase sigma factor | HC | chr1:28030240-28023352 | 20130731
Soybean Glyma13g20700.1 789 68.2 79.2  
LJGI gnl|LJGI|CN825552 1419 100.0 100.0 weakly similar to UniRef100_A7PT61 Cluster: Chromosome chr8 scaffold_29, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_29, whole genome shotgun sequence - Vitis vinifera (Grape), partial (80%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v0659340.1 length: 569 aa.
IPR000943 RNA polymerase sigma-70
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
FPrintScan PR00046 SIGMA70FCT 1.1e-21 357-370
381-389
505-517
526-541
541-552
PatternScan PS00715 SIGMA70_1 NA 357-370
PatternScan PS00716 SIGMA70_2 NA 526-552
IPR007624 RNA polymerase sigma-70 region 3
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
HMMPfam PF04539 Sigma70_r3 4.1e-14 413-488
IPR007627 RNA polymerase sigma-70 region 2
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
HMMPfam PF04542 Sigma70_r2 2.6e-18 333-402
IPR007630 RNA polymerase sigma-70 region 4
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
HMMPfam PF04545 Sigma70_r4 1.4e-17 501-554
IPR011991 Winged helix-turn-helix DNA-binding domain
Gene3D G3DSA:1.10.10.10 no description 2.1e-22 403-452
497-565
IPR013324 RNA polymerase sigma factor, region 3/4
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
superfamily SSF88659 Sigma3 1.8e-11 463-567
406-480
IPR013325 RNA polymerase sigma factor, region 2
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
superfamily SSF88946 Sigma2 3.3e-41 251-403
IPR014284 RNA polymerase sigma-70 like domain
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
HMMTigr TIGR02937 sigma70-ECF: 1.7e-35 329-556
no_ID  
Gene3D G3DSA:1.10.601.10 no description 7.2e-38 324-402
HMMPanther PTHR30603 RNA 4e-101 236-568
Seg seg seg NA 174-196
213-226
Wolf-PSORT
Lj5g3v0659340.1	chlo 10, nucl 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v0659340.1