Miyakogusa Predicted Gene
- Lj5g3v0626690.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K0J6E7_LOTJA |
513 |
95.5 |
95.5 |
(tr|K0J6E7) SNARE protein OS=Lotus japonicus GN=LjSYP71 PE=2 SV=1 |
| TAIR_pep |
AT3G09740.1 |
397 |
72.2 |
83.8 |
| Symbols: SYP71, ATSYP71 | syntaxin of plants 71 | chr3:2989615-2991354 FORWARD LENGTH=266 |
| Medicago |
Medtr1g066460.1 |
452 |
82.6 |
89.8 |
| syntaxin of plants protein | HC | chr1:28512776-28508155 | 20130731 |
| Soybean |
Glyma13g20220.1 |
465 |
84.9 |
92.1 |
|
| LJGI |
gnl|LJGI|TC61064 |
1588 |
100.0 |
100.0 |
similar to UniRef100_A7PT16 Cluster: Chromosome chr8 scaffold_29, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_29, whole genome shotgun sequence - Vitis vinifera (Grape), complete |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v0626690.1 |
length: 265 aa. |
| IPR000727 |
Target SNARE coiled-coil domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF05739 |
SNARE |
7.6e-14 |
175-232 |
| HMMSmart |
SM00397 |
Helical |
0.0064 |
166-232 |
| ProfileScan |
PS50192 |
T_SNARE |
14.361 |
170-232 |
| IPR006012 |
Syntaxin/epimorphin, conserved site |
| Molecular Function |
GO:0005484 |
SNAP receptor activity |
|
|
| Biological Process |
GO:0006886 |
intracellular protein transport |
|
|
| Cellular Component |
GO:0016020 |
membrane |
|
|
| PatternScan |
PS00914 |
SYNTAXIN |
NA |
176-215 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
40-61 |
| Gene3D |
G3DSA:1.20.5.110 |
no description |
1.8e-17 |
171-231 |
| HMMPanther |
PTHR12380 |
SYNTAXIN |
1.4e-144 |
1-262 |
| HMMPanther |
PTHR12380:SF21 |
HYPOTHETICAL |
1.4e-144 |
1-262 |
| Seg |
seg |
seg |
NA |
244-255 |
- Wolf-PSORT
Lj5g3v0626690.1 chlo 6, nucl 2, cyto 1, mito 1, plas 1, E.R. 1, pero 1, golg 1, cysk_nucl 1, golg_plas 1, cyto_pero 1, E.R._plas 1, mito_plas 1, cyto_E.R. 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v0626690.1 |
|