Miyakogusa Predicted Gene

Lj5g3v0626530.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SF84_LOTJA 178 100.0 100.0 (tr|I3SF84) Uncharacterized protein OS=Lotus japonicus PE=4 SV=1
TAIR_pep AT4G30330.1 166 90.9 96.6 | Symbols: | Small nuclear ribonucleoprotein family protein | chr4:14836773-14837919 REVERSE LENGTH=88
Medicago Medtr5g072530.1 177 98.9 100.0 | small nuclear ribonucleoprotein | HC | chr5:30881816-30885244 | 20130731
Soybean Glyma06g16410.1 178 100.0 100.0  
LJGI gnl|LJGI|TC64448 529 100.0 100.0 homologue to UniRef100_A7PGU9 Cluster: Chromosome chr17 scaffold_16, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_16, whole genome shotgun sequence - Vitis vinifera (Grape), complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v0626530.1 length: 88 aa.
IPR001163 Ribonucleoprotein LSM domain
method AccNumber shortName E-value location
HMMPfam PF01423 LSM 8.9e-18 20-83
IPR006649 Ribonucleoprotein LSM domain, eukaryotic/archaea-type
HMMSmart SM00651 snRNP 1.7e-17 19-85
IPR010920 Like-Sm (LSM) domain
superfamily SSF50182 Sm-like 1.3e-18 11-88
IPR027078 Small nuclear ribonucleoprotein E
Biological Process GO:0000398 mRNA splicing, via spliceosome    
Cellular Component GO:0005681 spliceosomal complex    
HMMPanther PTHR11193 SMALL 3.1e-63 1-88
no_ID  
Gene3D G3DSA:2.30.30.100 no description 9.9e-21 9-85
HMMPanther PTHR11193:SF0 SMALL 3.1e-63 1-88
Wolf-PSORT
Lj5g3v0626530.1	mito 6, chlo 4, cyto_nucl 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v0626530.1