Miyakogusa Predicted Gene

Lj5g3v0616300.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1L8R9_SOYBN 1060 74.8 81.7 (tr|I1L8R9) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G09650.1 954 67.2 77.4 | Symbols: HCF152, CRM3 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:2958704-2961040 FORWARD LENGTH=778
Medicago Medtr1g066900.1 1115 80.0 86.0 | PPR containing plant-like protein | HC | chr1:28759663-28757173 | 20130731
Soybean Glyma10g05630.1 1041 75.1 81.7  
LJGI gnl|LJGI|TC70033 797 100.0 100.0 homologue to UniRef100_A7PSR9 Cluster: Chromosome chr8 scaffold_29, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_29, whole genome shotgun sequence - Vitis vinifera (Grape), partial (14%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v0616300.1 length: 740 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF12854 PPR_1 7.5e-06 367-397
405-434
HMMPfam PF13041 PPR_2 6.7e-09 212-261
442-489
549-594
HMMPfam PF13812 PPR_3 0.2 516-542
637-668
HMMTigr TIGR00756 PPR: 2.7e-08 217-249
372-399
409-436
444-479
480-513
515-543
552-585
ProfileScan PS51375 PPR 8.517 132-166
167-197
213-247
248-282
283-317
369-403
407-441
442-472
478-512
549-583
513-543
584-614
634-668
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 0.00066 366-400
no_ID  
HMMPanther PTHR24015 FAMILY 6.7e-118 6-687
HMMPanther PTHR24015:SF0 SUBFAMILY 6.7e-118 6-687
Seg seg seg NA 4-41
136-147
349-355
565-578
729-739
Wolf-PSORT
Lj5g3v0616300.1	chlo 12, cyto 1, extr 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v0616300.1