Miyakogusa Predicted Gene

Lj5g3v0616120.4
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LHH2_SOYBN 790 73.5 81.1 (tr|K7LHH2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G45630.1 416 58.1 70.3 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family protein | chr3:16748751-16753190 REVERSE LENGTH=989
Medicago Medtr1g066970.1 745 70.8 79.4 | RNA-binding (RRM/RBD/RNP motif) family protein, putative | HC | chr1:28798997-28807271 | 20130731
Soybean Glyma10g05590.1 776 70.1 77.2  
LJGI gnl|LJGI|TC61415 107 89.4 89.4 similar to UniRef100_A7NZC1 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v0616120.4 length: 529 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 5.6e-05 114-192
HMMSmart SM00360 RNA 0.0001 113-194
ProfileScan PS50102 RRM 9.729 112-198
IPR001841 Zinc finger, RING-type
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50089 ZF_RING_2 10.055 11-59
IPR003954 RNA recognition motif domain, eukaryote
Molecular Function GO:0003676 nucleic acid binding    
HMMSmart SM00361 RNA 1.6e-09 113-194
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 3.2e-09 111-198
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 4.8e-13 5-69
no_ID  
HMMPanther PTHR12603 CCR4-NOT 2e-114 1-234
HMMPanther PTHR12603:SF0 SUBFAMILY 2e-114 1-234
Seg seg seg NA 83-97
429-441
superfamily SSF54928 RNA-binding 3.3e-14 104-194
superfamily SSF57850 RING/U-box 3.7e-13 1-80
Wolf-PSORT
Lj5g3v0616120.4	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v0616120.4