Miyakogusa Predicted Gene

Lj5g3v0615690.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr5

Full length sequence(34192293 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7LZK3_SOYBN 1058 70.7 75.3 (tr|K7LZK3) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT5G02810.1 397 45.1 56.5 | Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727

Medicago Medtr1g067110.4 942 66.3 72.1 | two-component response regulator-like APRR7 protein | HC | chr1:28871221-28881239 | 20130731

Soybean Glyma10g05520.1 812 67.5 72.9

LJGI gnl|LJGI|TC77060 624 99.7 99.7 similar to UniRef100_Q93WK5 Cluster: Two-component response regulator-like APRR7; n=1; Arabidopsis thaliana|Rep: Two-component response regulator-like APRR7 - Arabidopsis thaliana (Mouse-ear cress), partial (4%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj5g3v0615690.2 length: 761 aa.

IPR001789 Signal transduction response regulator, receiver domain

method AccNumber shortName E-value location

Molecular Function GO:0000156 phosphorelay response regulator activity

Biological Process GO:0000160 phosphorelay signal transduction system

Biological Process GO:0006355 regulation of transcription, DNA-dependent

HMMPfam PF00072 Response_reg 1.3e-20 93-204

HMMSmart SM00448 cheY-homologous 2.8e-24 91-206

ProfileScan PS50110 RESPONSE_REGULATORY 29.112 92-210

IPR010402 CCT domain

Molecular Function GO:0005515 protein binding

HMMPfam PF06203 CCT 1.8e-14 704-750

ProfileScan PS51017 CCT 12.729 707-749

IPR011006 CheY-like superfamily

superfamily SSF52172 CheY-like 2e-32 88-217

no_ID

Gene3D G3DSA:3.40.50.2300 no description 2.9e-34 90-231

HMMPanther PTHR26402 RESPONSE 5.3e-33 91-212

HMMPanther PTHR26402:SF256TWO-COMPONENT RESPONSE 5.3e-33 91-212

Seg seg seg NA 215-224
239-274
637-694
710-721

Wolf-PSORT

Lj5g3v0615690.2 nucl 12, cyto 1, vacu 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj5g3v0615690.2

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7LZK3_SOYBN	1058	70.7	75.3	(tr\|K7LZK3) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT5G02810.1	397	45.1	56.5	\| Symbols: PRR7, APRR7 \| pseudo-response regulator 7 \| chr5:638283-641461 REVERSE LENGTH=727
Medicago	Medtr1g067110.4	942	66.3	72.1	\| two-component response regulator-like APRR7 protein \| HC \| chr1:28871221-28881239 \| 20130731
Soybean	Glyma10g05520.1	812	67.5	72.9
LJGI	gnl\|LJGI\|TC77060	624	99.7	99.7	similar to UniRef100_Q93WK5 Cluster: Two-component response regulator-like APRR7; n=1; Arabidopsis thaliana\|Rep: Two-component response regulator-like APRR7 - Arabidopsis thaliana (Mouse-ear cress), partial (4%)

IPR001789	Signal transduction response regulator, receiver domain
Lj5g3v0615690.2				length: 761 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0000156	phosphorelay response regulator activity
Biological Process	GO:0000160	phosphorelay signal transduction system
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
HMMPfam	PF00072	Response_reg	1.3e-20	93-204
HMMSmart	SM00448	cheY-homologous	2.8e-24	91-206
ProfileScan	PS50110	RESPONSE_REGULATORY	29.112	92-210
IPR010402	CCT domain
Molecular Function	GO:0005515	protein binding
HMMPfam	PF06203	CCT	1.8e-14	704-750
ProfileScan	PS51017	CCT	12.729	707-749
IPR011006	CheY-like superfamily
superfamily	SSF52172	CheY-like	2e-32	88-217
no_ID
Gene3D	G3DSA:3.40.50.2300	no description	2.9e-34	90-231
HMMPanther	PTHR26402	RESPONSE	5.3e-33	91-212
HMMPanther	PTHR26402:SF256TWO-COMPONENT	RESPONSE	5.3e-33	91-212
Seg	seg	seg	NA	215-224 239-274 637-694 710-721