Miyakogusa Predicted Gene

Lj5g3v0614380.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LYU6_SOYBN 1082 74.9 85.0 (tr|I1LYU6) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G53700.1 975 67.2 82.0 | Symbols: MEE40 | Pentatricopeptide repeat (PPR) superfamily protein | chr3:19900303-19902567 FORWARD LENGTH=754
Medicago Medtr1g068960.1 1025 71.7 84.1 | PPR containing plant-like protein | HC | chr1:29509792-29507424 | 20130731
Soybean Glyma13g19420.1 1082 74.9 85.0  
LJGI gnl|LJGI|FS342311 1457 99.9 99.9 similar to UniRef100_A7PSR1 Cluster: Chromosome chr8 scaffold_29, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_29, whole genome shotgun sequence - Vitis vinifera (Grape), partial (32%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v0614380.1 length: 762 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF12854 PPR_1 8e-13 268-297
372-400
478-510
582-612
HMMPfam PF13041 PPR_2 4.5e-12 201-248
306-355
411-460
517-560
625-670
HMMPfam PF13812 PPR_3 0.14 133-166
HMMTigr TIGR00756 PPR: 1.8e-06 134-168
205-238
240-271
274-307
309-343
344-378
379-413
414-448
449-482
484-515
519-552
554-588
589-622
625-657
ProfileScan PS51375 PPR 10.271 96-130
131-166
167-201
202-236
237-271
272-306
307-341
342-376
377-411
412-446
447-481
482-516
517-551
552-586
587-621
622-656
657-692
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 3e-11 619-652
no_ID  
HMMPanther PTHR24015 FAMILY 4.4e-192 11-693
HMMPanther PTHR24015:SF0 SUBFAMILY 4.4e-192 11-693
Seg seg seg NA 16-33
36-57
58-74
461-472
superfamily SSF48452 TPR-like 0.00012 276-370
superfamily SSF81901 HCP-like 5.1e-05 380-592
Wolf-PSORT
Lj5g3v0614380.1	chlo 6, mito 4, cyto_mito 3.5, nucl 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v0614380.1