Miyakogusa Predicted Gene

Lj5g3v0611970.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7M6M6_SOYBN 1399 75.8 83.1 (tr|K7M6M6) DNA topoisomerase OS=Glycine max PE=3 SV=1
TAIR_pep AT4G31210.1 1170 66.7 79.7 | Symbols: | DNA topoisomerase, type IA, core | chr4:15165280-15172534 FORWARD LENGTH=1284
Medicago Medtr0245s0010.2 1310 74.9 82.9 | DNA topoisomerase I, bacterial protein | HC | scaffold0245:24305-1565 | 20130731
Soybean Glyma14g18340.1 701 81.0 87.0  
LJGI gnl|LJGI|DC594589 581 99.3 99.3  
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v0611970.2 length: 1048 aa.
IPR000380 DNA topoisomerase, type IA
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003917 DNA topoisomerase type I activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
FPrintScan PR00417 PRTPISMRASEI 1.7e-30 312-325
402-420
542-551
620-636
735-749
HMMPanther PTHR11390 PROKARYOTIC 1.3e-198 230-886
IPR003601 DNA topoisomerase, type IA, domain 2
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003916 DNA topoisomerase activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
HMMSmart SM00436 Bacterial 1.9e-43 344-432
IPR003602 DNA topoisomerase, type IA, DNA-binding
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003916 DNA topoisomerase activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
HMMSmart SM00437 Bacterial 5.3e-93 491-772
IPR005733 DNA topoisomerase I, bacterial-type
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003917 DNA topoisomerase type I activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
HMMTigr TIGR01051 topA_bact: 7.7e-205 241-887
IPR006171 Toprim domain
Gene3D G3DSA:3.40.50.140 no description 9.8e-34 238-374
HMMPfam PF01751 Toprim 1.6e-19 240-353
HMMSmart SM00493 no description 2.1e-17 238-338
IPR013497 DNA topoisomerase, type IA, central
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003916 DNA topoisomerase activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
HMMPfam PF01131 Topoisom_bac 8.5e-114 367-809
IPR013498 DNA topoisomerase, type IA, zn finger
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003916 DNA topoisomerase activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
HMMPfam PF01396 zf-C4_Topoisom 2.1e-08 852-888
IPR013824 DNA topoisomerase, type IA, central region, subdomain 1
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003916 DNA topoisomerase activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
Gene3D G3DSA:1.10.460.10 no description 1.8e-51 718-858
IPR013825 DNA topoisomerase, type IA, central region, subdomain 2
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003916 DNA topoisomerase activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
Gene3D G3DSA:2.70.20.10 no description 4.8e-22 424-562
568-717
IPR023405 DNA topoisomerase, type IA, core domain
superfamily SSF56712 Prokaryotic 9.8e-166 237-865
IPR023406 DNA topoisomerase, type IA, active site
Molecular Function GO:0003917 DNA topoisomerase type I activity    
PatternScan PS00396 TOPOISOMERASE_I_PROK NA 528-551
no_ID  
Seg seg seg NA 6-17
72-86
93-115
135-157
179-191
208-222
238-251
Wolf-PSORT
Lj5g3v0611970.2	chlo 11.5, chlo_mito 7.33333, mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v0611970.2