Miyakogusa Predicted Gene

Lj5g3v0553260.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KTN3_SOYBN 1854 65.3 72.1 (tr|K7KTN3) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G31160.1 697 49.3 60.5 | Symbols: DCAF1 | DDB1-CUL4 associated factor 1 | chr4:15145936-15152939 FORWARD LENGTH=1883
Medicago Medtr3g108470.1 1809 65.7 73.5 | DDB1- and CUL4-associated factor-like protein | HC | chr3:50133071-50123613 | 20130731
Soybean Glyma06g07880.1 1724 62.2 68.8  
LJGI gnl|LJGI|FS361548 1063 99.1 99.1 similar to UniRef100_A7P540 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v0553260.1 length: 1506 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMSmart SM00320 WD40 2.8e+02 1115-1155
1158-1198
1203-1241
IPR006594 LisH dimerisation motif
Molecular Function GO:0005515 protein binding    
HMMSmart SM00667 Lissencephaly 0.0081 773-805
ProfileScan PS50896 LISH 9.090 773-805
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.7e-17 1114-1351
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 10.838 1123-1207
superfamily SSF50978 WD40 5.2e-17 1131-1355
no_ID  
HMMPanther PTHR13129 VPRBP 0 43-1504
HMMPanther PTHR13129:SF4 SUBFAMILY 0 43-1504
Seg seg seg NA 45-72
90-99
107-118
159-173
290-309
328-345
622-638
668-686
743-758
868-883
1058-1071
1433-1458
1465-1487
Wolf-PSORT
Lj5g3v0553260.1	nucl 8, plas 3, cyto 1, E.R. 1, golg 1, cyto_E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v0553260.1