Miyakogusa Predicted Gene

Lj5g3v0539960.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr5

Full length sequence(34192293 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I3S4U9_LOTJA 327 93.4 93.4 (tr|I3S4U9) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1

TAIR_pep AT2G25610.1 284 82.3 87.3 | Symbols: | ATPase, F0/V0 complex, subunit C protein | chr2:10901585-10902494 REVERSE LENGTH=178

Medicago Medtr7g090330.1 285 85.1 89.0 | vacuolar proton-ATPase subunit C proteolipid protein | HC | chr7:35528642-35532633 | 20130731

Soybean Glyma17g31060.1 285 85.1 86.9

LJGI gnl|LJGI|TC77312 1088 100.0 100.0 homologue to UniRef100_Q84V02 Cluster: Vacuolar membrane ATPase subunit c''; n=1; Citrus limon|Rep: Vacuolar membrane ATPase subunit c'' - Citrus limon (Lemon), partial (92%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj5g3v0539960.1 length: 182 aa.

IPR000245 V-ATPase proteolipid subunit

method AccNumber shortName E-value location

Molecular Function GO:0015078 hydrogen ion transmembrane transporter activity

Biological Process GO:0015991 ATP hydrolysis coupled proton transport

Cellular Component GO:0033179 proton-transporting V-type ATPase, V0 domain

FPrintScan PR00122 VACATPASE 1.5e-25 42-66
68-92
124-150
151-174

IPR002379 V-ATPase proteolipid subunit C-like domain

Molecular Function GO:0015078 hydrogen ion transmembrane transporter activity

Biological Process GO:0015991 ATP hydrolysis coupled proton transport

Cellular Component GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain

HMMPfam PF00137 ATP-synt_C 2.3e-11 26-89
110-173

superfamily SSF81333 F1F0 7e-14 19-93
103-177

no_ID

Gene3D G3DSA:1.20.120.610 no description 8.6e-54 16-175

HMMPanther PTHR10263 V-TYPE 5.8e-101 14-182

HMMPanther PTHR10263:SF1 V-TYPE 5.8e-101 14-182

Seg seg seg NA 76-87

Wolf-PSORT

Lj5g3v0539960.1 chlo 13

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj5g3v0539960.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I3S4U9_LOTJA	327	93.4	93.4	(tr\|I3S4U9) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep	AT2G25610.1	284	82.3	87.3	\| Symbols: \| ATPase, F0/V0 complex, subunit C protein \| chr2:10901585-10902494 REVERSE LENGTH=178
Medicago	Medtr7g090330.1	285	85.1	89.0	\| vacuolar proton-ATPase subunit C proteolipid protein \| HC \| chr7:35528642-35532633 \| 20130731
Soybean	Glyma17g31060.1	285	85.1	86.9
LJGI	gnl\|LJGI\|TC77312	1088	100.0	100.0	homologue to UniRef100_Q84V02 Cluster: Vacuolar membrane ATPase subunit c''; n=1; Citrus limon\|Rep: Vacuolar membrane ATPase subunit c'' - Citrus limon (Lemon), partial (92%)

IPR000245	V-ATPase proteolipid subunit
Lj5g3v0539960.1				length: 182 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0015078	hydrogen ion transmembrane transporter activity
Biological Process	GO:0015991	ATP hydrolysis coupled proton transport
Cellular Component	GO:0033179	proton-transporting V-type ATPase, V0 domain
FPrintScan	PR00122	VACATPASE	1.5e-25	42-66 68-92 124-150 151-174
IPR002379	V-ATPase proteolipid subunit C-like domain
Molecular Function	GO:0015078	hydrogen ion transmembrane transporter activity
Biological Process	GO:0015991	ATP hydrolysis coupled proton transport
Cellular Component	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain
HMMPfam	PF00137	ATP-synt_C	2.3e-11	26-89 110-173
superfamily	SSF81333	F1F0	7e-14	19-93 103-177
no_ID
Gene3D	G3DSA:1.20.120.610	no description	8.6e-54	16-175
HMMPanther	PTHR10263	V-TYPE	5.8e-101	14-182
HMMPanther	PTHR10263:SF1	V-TYPE	5.8e-101	14-182
Seg	seg	seg	NA	76-87