Miyakogusa Predicted Gene

Lj5g3v0539710.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL C6TLC4_SOYBN 167 96.4 98.8 (tr|C6TLC4) Putative uncharacterized protein OS=Glycine max PE=2 SV=1
TAIR_pep AT5G11170.2 148 85.5 90.4 | Symbols: | DEAD/DEAH box RNA helicase family protein | chr5:3554272-3556646 FORWARD LENGTH=344
Medicago Medtr1g012420.1 165 95.2 98.8 | DEAD-box ATP-dependent RNA helicase-like protein | HC | chr1:2463886-2455302 | 20130731
Soybean Glyma06g07280.2 166 96.4 98.8  
LJGI gnl|LJGI|TC70039 533 99.6 99.6 similar to UniRef100_Q0JM17 Cluster: DEAD-box ATP-dependent RNA helicase 56; n=1; Oryza sativa Japonica Group|Rep: DEAD-box ATP-dependent RNA helicase 56 - Oryza sativa subsp. japonica (Rice), partial (23%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v0539710.1 length: 91 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 1.5e-19 13-64
HMMSmart SM00490 helicase 2.1e-12 2-64
ProfileScan PS51194 HELICASE_CTER 13.616 1-91
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.2e-22 12-91
no_ID  
Gene3D G3DSA:3.40.50.300 no description 3.8e-27 11-87
HMMPanther PTHR24031 FAMILY 2.4e-49 9-91
HMMPanther PTHR24031:SF75 SUBFAMILY 2.4e-49 9-91
Wolf-PSORT
Lj5g3v0539710.1	cyto 9, chlo 2, nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v0539710.1