Miyakogusa Predicted Gene
- Lj5g3v0526500.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SNM5_LOTJA |
219 |
89.7 |
91.5 |
(tr|I3SNM5) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT4G31930.1 |
122 |
47.0 |
67.5 |
| Symbols: | Mitochondrial glycoprotein family protein | chr4:15449710-15450804 REVERSE LENGTH=234 |
| Medicago |
Medtr1g013120.1 |
177 |
68.4 |
83.8 |
| glycoprotein family protein | HC | chr1:2858294-2861439 | 20130731 |
| Soybean |
Glyma17g33120.3 |
182 |
70.9 |
82.9 |
|
| LJGI |
gnl|LJGI|TC75774 |
553 |
94.9 |
94.9 |
weakly similar to UniRef100_A7P5Y6 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (42%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v0526500.1 |
length: 120 aa. |
| IPR003428 |
Mitochondrial glycoprotein |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005759 |
mitochondrial matrix |
|
|
| Gene3D |
G3DSA:3.10.280.10 |
no description |
6.9e-17 |
18-117 |
| HMMPfam |
PF02330 |
MAM33 |
1.1e-12 |
26-117 |
| superfamily |
SSF54529 |
Mitochondrial |
1.5e-19 |
23-119 |
| no_ID |
|
| HMMPanther |
PTHR10826 |
COMPLEMENT |
5.4e-16 |
19-117 |
| HMMPanther |
PTHR10826:SF1 |
COMPLEMENT |
5.4e-16 |
19-117 |
- Wolf-PSORT
Lj5g3v0526500.1 cyto 9.5, cyto_E.R. 5.5, cysk 2, mito 1, golg 1, cysk_nucl 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v0526500.1 |
|