Miyakogusa Predicted Gene
- Lj5g3v0473540.3
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7M630_SOYBN |
566 |
91.8 |
94.4 |
(tr|K7M630) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT5G10720.1 |
400 |
76.7 |
87.2 |
| Symbols: AHK5, CKI2, HK5 | histidine kinase 5 | chr5:3386835-3390541 FORWARD LENGTH=922 |
| Medicago |
Medtr1g013360.1 |
544 |
88.9 |
93.8 |
| histidine kinase cytokinin receptor | HC | chr1:3457586-3452043 | 20130731 |
| Soybean |
Glyma17g33670.1 |
527 |
87.1 |
90.4 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v0473540.3 |
length: 303 aa. |
| IPR003594 |
Histidine kinase-like ATPase, ATP-binding domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| Gene3D |
G3DSA:3.30.565.10 |
no description |
3.8e-14 |
154-225 |
| HMMPfam |
PF02518 |
HATPase_c |
0.00011 |
197-227 |
| superfamily |
SSF55874 |
ATPase |
2.7e-14 |
140-231 |
| IPR003661 |
Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain |
| Molecular Function |
GO:0000155 |
phosphorelay sensor kinase activity |
|
|
| Biological Process |
GO:0007165 |
signal transduction |
|
|
| Cellular Component |
GO:0016020 |
membrane |
|
|
| HMMPfam |
PF00512 |
HisKA |
7.6e-18 |
88-151 |
| HMMSmart |
SM00388 |
His |
2.8e-19 |
86-151 |
| IPR005467 |
Signal transduction histidine kinase, core |
| ProfileScan |
PS50109 |
HIS_KIN |
24.284 |
93-226 |
| IPR009082 |
Signal transduction histidine kinase, homodimeric domain |
| Molecular Function |
GO:0004871 |
signal transducer activity |
|
|
| Biological Process |
GO:0007165 |
signal transduction |
|
|
| Gene3D |
G3DSA:1.10.287.130 |
no description |
1.5e-11 |
86-147 |
| superfamily |
SSF47384 |
Homodimeric |
2.2e-16 |
69-153 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
57-78 |
| HMMPanther |
PTHR24423 |
TWO |
4.3e-88 |
1-226 |
| HMMPanther |
PTHR24423:SF339SENSOR |
HISTIDINE |
4.3e-88 |
1-226 |
- Wolf-PSORT
Lj5g3v0473540.3 cyto 6, pero 4, nucl 3, cyto_plas 3
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v0473540.3 |
|