Miyakogusa Predicted Gene
- Lj5g3v0240220.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MY43_SOYBN |
516 |
91.8 |
96.6 |
(tr|I1MY43) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT1G75850.1 |
473 |
83.2 |
94.3 |
| Symbols: VPS35B | VPS35 homolog B | chr1:28478053-28483874 REVERSE LENGTH=790 |
| Medicago |
Medtr1g025610.1 |
496 |
86.8 |
94.7 |
| vacuolar protein sorting-associated 35A-like protein | HC | chr1:8204815-8194669 | 20130731 |
| Soybean |
Glyma14g40270.1 |
516 |
91.0 |
97.0 |
|
| LJGI |
gnl|LJGI|FS325243 |
1174 |
100.0 |
100.0 |
similar to UniRef100_A7NSS5 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (24%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v0240220.1 |
length: 266 aa. |
| IPR005378 |
Vacuolar protein sorting-associated protein 35 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR11099 |
VACUOLAR |
8.7e-159 |
1-266 |
| HMMPfam |
PF03635 |
Vps35 |
9.4e-132 |
11-266 |
- Wolf-PSORT
Lj5g3v0240220.1 cyto 10, nucl 2, extr 1, cysk_nucl 1, nucl_plas 1, E.R._vacu 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v0240220.1 |
|