Miyakogusa Predicted Gene
- Lj5g3v0240210.3
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MY43_SOYBN |
631 |
92.4 |
96.0 |
(tr|I1MY43) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT1G75850.1 |
541 |
78.7 |
88.4 |
| Symbols: VPS35B | VPS35 homolog B | chr1:28478053-28483874 REVERSE LENGTH=790 |
| Medicago |
Medtr1g025610.1 |
586 |
89.1 |
93.3 |
| vacuolar protein sorting-associated 35A-like protein | HC | chr1:8204815-8194669 | 20130731 |
| Soybean |
Glyma17g37870.1 |
631 |
92.4 |
96.0 |
|
| LJGI |
gnl|LJGI|TC70642 |
622 |
99.1 |
99.1 |
similar to UniRef100_A7NSS5 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (29%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v0240210.3 |
length: 329 aa. |
| IPR005378 |
Vacuolar protein sorting-associated protein 35 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR11099 |
VACUOLAR |
7.7e-138 |
1-329 |
| HMMPfam |
PF03635 |
Vps35 |
1.7e-106 |
1-329 |
| no_ID |
|
| Seg |
seg |
seg |
NA |
132-139 |
- Wolf-PSORT
Lj5g3v0240210.3 chlo 3, vacu 3, nucl 2, E.R. 2, golg 2, plas 1, extr 1, cyto_nucl 1, cysk_nucl 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v0240210.3 |
|