Miyakogusa Predicted Gene

Lj5g3v0186680.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SES0_LOTJA 157 87.5 87.5 (tr|I3SES0) Uncharacterized protein OS=Lotus japonicus PE=4 SV=1
TAIR_pep AT5G42190.1 81.3 36.8 47.2 | Symbols: ASK2, SKP1B | E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein | chr5:16854495-16855516 REVERSE LENGTH=171
Medicago Medtr7g094150.1 94.7 43.1 54.6 | SCF ubiquitin ligase, SKP1 component | HC | chr7:37476563-37476093 | 20130731
Soybean Glyma01g36850.2 97.1 47.3 55.0  
LJGI gnl|LJGI|TC69119 543 100.0 100.0 similar to UniRef100_Q9XF99 Cluster: Skp1; n=1; Medicago sativa|Rep: Skp1 - Medicago sativa (Alfalfa), partial (58%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v0186680.1 length: 134 aa.
IPR001232 SKP1 component
method AccNumber shortName E-value location
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
HMMPanther PTHR11165 SKP1 3e-43 6-124
HMMSmart SM00512 Found 1.3e-27 5-98
IPR011333 BTB/POZ fold
Gene3D G3DSA:3.30.710.10 no description 5.9e-36 6-124
superfamily SSF54695 POZ 6.2e-13 6-98
IPR016072 SKP1 component, dimerisation
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
HMMPfam PF01466 Skp1 8.9e-19 71-123
superfamily SSF81382 Skp1 7.9e-17 66-132
IPR016073 SKP1 component, POZ
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
HMMPfam PF03931 Skp1_POZ 9.3e-15 7-64
IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit
HMMPIR PIRSF028729 E3 2.7e-31 1-125
no_ID  
HMMPanther PTHR11165:SF47 ASK 3e-43 6-124
Seg seg seg NA 16-26
89-105
Wolf-PSORT
Lj5g3v0186680.1	nucl 6, cyto 3, cysk_nucl 3, chlo 2, mito 2, chlo_mito 2, cyto_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v0186680.1