Miyakogusa Predicted Gene
- Lj5g3v0104840.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7M5F6_SOYBN |
178 |
86.7 |
91.8 |
(tr|K7M5F6) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT4G39250.1 |
115 |
60.4 |
71.4 |
| Symbols: ATRL1, RSM2, RL1 | RAD-like 1 | chr4:18271457-18271857 REVERSE LENGTH=100 |
| Medicago |
Medtr1g022290.1 |
176 |
86.6 |
91.8 |
| MYB family transcription factor | HC | chr1:7023184-7024154 | 20130731 |
| Soybean |
Glyma14g08090.3 |
171 |
87.1 |
93.5 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v0104840.1 |
length: 97 aa. |
| IPR001005 |
SANT/Myb domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003682 |
chromatin binding |
|
|
| HMMPfam |
PF00249 |
Myb_DNA-binding |
2.1e-07 |
7-51 |
| HMMSmart |
SM00717 |
SANT |
7.2e-07 |
3-55 |
| IPR009057 |
Homeodomain-like |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| superfamily |
SSF46689 |
Homeodomain-like |
1.5e-13 |
6-60 |
| IPR017884 |
SANT domain |
| ProfileScan |
PS51293 |
SANT |
9.294 |
2-62 |
| no_ID |
|
| HMMPanther |
PTHR25040 |
FAMILY |
2.9e-33 |
1-70 |
| HMMPanther |
PTHR25040:SF76 |
SUBFAMILY |
2.9e-33 |
1-70 |
- Wolf-PSORT
Lj5g3v0104840.1 nucl 5.5, cyto_nucl 5, cyto 3.5, mito 2, plas 2, mito_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v0104840.1 |
|