Miyakogusa Predicted Gene

Lj5g3v0035410.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MXR5_SOYBN 400 69.7 73.4 (tr|I1MXR5) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT1G47490.2 284 68.1 75.7 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C | chr1:17424801-17426114 FORWARD LENGTH=310
Medicago Medtr1g020080.2 385 64.8 72.0 | polyadenylate-binding protein RBP47C | HC | chr1:6171590-6176186 | 20130731
Soybean Glyma14g08840.1 395 68.8 73.2  
LJGI gnl|LJGI|TC59209 1291 99.8 99.8 similar to UniRef100_A7NTR1 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (41%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v0035410.1 length: 305 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 9.9e-15 87-149
180-250
HMMSmart SM00360 RNA 6.8e-17 86-161
179-253
ProfileScan PS50102 RRM 16.364 85-165
178-257
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 6e-21 67-164
171-272
no_ID  
HMMPanther PTHR24012 FAMILY 7.7e-112 83-286
HMMPanther PTHR24012:SF55 SUBFAMILY 7.7e-112 83-286
Seg seg seg NA 39-76
260-275
superfamily SSF54928 RNA-binding 3.1e-33 83-264
Wolf-PSORT
Lj5g3v0035410.1	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v0035410.1