Miyakogusa Predicted Gene
- Lj4g3v3113250.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1K5J5_SOYBN |
145 |
97.1 |
100.0 |
(tr|I1K5J5) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G12400.1 |
113 |
72.5 |
87.0 |
| Symbols: | Nucleotide excision repair, TFIIH, subunit TTDA | chr1:4222296-4222603 FORWARD LENGTH=71 |
| Medicago |
Medtr5g055890.1 |
141 |
92.9 |
100.0 |
| nucleotide excision repair, TFIIH, subunit TTDA protein | HC | chr5:23016353-23017578 | 20130731 |
| Soybean |
Glyma05g34510.1 |
145 |
97.1 |
100.0 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v3113250.1 |
length: 70 aa. |
| IPR009400 |
TFIIH subunit TTDA/Tfb5 |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0000439 |
core TFIIH complex |
|
|
| Biological Process |
GO:0006289 |
nucleotide-excision repair |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| Gene3D |
G3DSA:3.30.70.1220 |
no description |
2.5e-26 |
1-67 |
| HMMPfam |
PF06331 |
Tbf5 |
2e-19 |
1-68 |
| superfamily |
SSF142897 |
TFB5-like |
4.1e-19 |
6-70 |
- Wolf-PSORT
Lj4g3v3113250.1 cyto 10, nucl 2, plas 1, cysk 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v3113250.1 |
|