Miyakogusa Predicted Gene
- Lj4g3v3099260.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7L9P2_MEDTR |
491 |
64.5 |
72.7 |
(tr|G7L9P2) CONSTANS-like zinc finger protein OS=Medicago truncatula GN=MTR_8g104190 PE=4 SV=1 |
| TAIR_pep |
AT1G68520.1 |
271 |
41.9 |
54.0 |
| Symbols: | B-box type zinc finger protein with CCT domain | chr1:25709331-25710749 REVERSE LENGTH=406 |
| Medicago |
Medtr8g104190.1 |
491 |
64.5 |
72.7 |
| zinc finger constans-like protein | HC | chr8:43867638-43869522 | 20130731 |
| Soybean |
Glyma08g04570.1 |
437 |
62.2 |
71.8 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v3099260.1 |
length: 407 aa. |
| IPR000315 |
Zinc finger, B-box |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005622 |
intracellular |
|
|
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| HMMPfam |
PF00643 |
zf-B_box |
5.1e-05 |
16-59 |
| HMMSmart |
SM00336 |
B-Box-type |
4e-09 |
14-61 |
| ProfileScan |
PS50119 |
ZF_BBOX |
10.296 |
14-61 |
| IPR010402 |
CCT domain |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF06203 |
CCT |
7.4e-19 |
351-393 |
| ProfileScan |
PS51017 |
CCT |
16.023 |
351-393 |
| no_ID |
|
| HMMPanther |
PTHR31874 |
FAMILY |
5e-91 |
1-407 |
- Wolf-PSORT
Lj4g3v3099260.1 chlo 5, cyto 5, nucl 3, chlo_mito 3
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v3099260.1 |
|