Miyakogusa Predicted Gene

Lj4g3v3096100.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KQ47_SOYBN 1610 89.2 91.6 (tr|I1KQ47) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT1G49040.1 1241 68.5 80.3 | Symbols: SCD1 | stomatal cytokinesis defective / SCD1 protein (SCD1) | chr1:18139419-18148826 REVERSE LENGTH=1187
Medicago Medtr8g104010.2 1598 87.8 91.1 | stomatal cytokinesis defective protein, putative | HC | chr8:43793799-43779326 | 20130731
Soybean Glyma08g04510.1 1589 88.5 91.0  
LJGI gnl|LJGI|TC60478 2335 99.8 99.8 similar to UniRef100_A7PGQ8 Cluster: Chromosome chr17 scaffold_16, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_16, whole genome shotgun sequence - Vitis vinifera (Grape), partial (33%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v3096100.1 length: 876 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.045 518-565
573-607
614-648
697-730
734-772
846-871
HMMSmart SM00320 WD40 1.1 514-565
570-607
610-648
651-690
693-730
733-772
832-871
ProfileScan PS50082 WD_REPEATS_2 11.110 547-565
577-616
617-657
700-739
740-772
IPR005112 dDENN domain
HMMPfam PF03455 dDENN 7.9e-15 37-104
HMMSmart SM00801 Domain 4e-11 37-105
ProfileScan PS50947 DDENN 13.484 37-105
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.3e-36 499-643
845-872
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 43.687 547-781
superfamily SSF50978 WD40 0.0053 510-814
833-871
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 635-649
677-691
759-773
858-872
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 3.3e-06 594-608
635-649
717-731
no_ID  
HMMPanther PTHR22844 F-BOX 0 36-849
HMMPanther PTHR22844:SF13 SUBFAMILY 0 36-849
Seg seg seg NA 145-156
222-235
473-491
Wolf-PSORT
Lj4g3v3096100.1	nucl 8, cyto 4, cysk_nucl 4, nucl_plas 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v3096100.1