Miyakogusa Predicted Gene

Lj4g3v3081730.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7L8X6_MEDTR 253 72.4 74.6 (tr|G7L8X6) Ras-related protein Rab-5C OS=Medicago truncatula GN=MTR_8g103550 PE=3 SV=1
TAIR_pep AT4G19640.1 174 50.0 62.1 | Symbols: ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B, ATRAB-F2B, RAB-F2B | Ras-related small GTP-binding family protein | chr4:10687441-10689449 REVERSE LENGTH=200
Medicago Medtr8g103550.1 254 72.4 74.6 | RAB GTPase-like protein A5B | HC | chr8:43575571-43573270 | 20130731
Soybean Glyma15g01780.1 201 57.5 66.9  
LJGI gnl|LJGI|TC80246 462 100.0 100.0 similar to UniRef100_A7PER1 Cluster: Chromosome chr11 scaffold_13, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr11 scaffold_13, whole genome shotgun sequence - Vitis vinifera (Grape), partial (92%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v3081730.1 length: 139 aa.
IPR001806 Small GTPase superfamily
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
FPrintScan PR00449 RASTRNSFRMNG 1.5e-19 16-32
34-56
90-112
HMMPfam PF00071 Ras 4e-27 2-77
IPR003578 Small GTPase superfamily, Rho type
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMSmart SM00174 Rho 0.00027 2-115
IPR003579 Small GTPase superfamily, Rab type
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
Biological Process GO:0015031 protein transport    
HMMSmart SM00175 Rab 1.5e-28 1-115
IPR005225 Small GTP-binding protein domain
Molecular Function GO:0005525 GTP binding    
HMMTigr TIGR00231 small_GTP: 1.3e-13 3-77
IPR020849 Small GTPase superfamily, Ras type
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0007165 signal transduction    
Cellular Component GO:0016020 membrane    
HMMSmart SM00173 Ras 3.5e-08 2-115
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 2.3e-33 2-112
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1.6e-10 2-77
78-138
HMMPanther PTHR24073 FAMILY 3.5e-61 1-138
HMMPanther PTHR24073:SF132SUBFAMILY NOT 3.5e-61 1-138
ProfileScan PS51419 RAB 17.691 1-139
Wolf-PSORT
Lj4g3v3081730.1	chlo 10, nucl 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v3081730.1