Miyakogusa Predicted Gene

Lj4g3v3014900.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KPQ1_SOYBN 596 78.9 87.6 (tr|I1KPQ1) tRNA pseudouridine synthase OS=Glycine max PE=3 SV=2
TAIR_pep AT5G35400.1 414 59.8 70.1 | Symbols: | Pseudouridine synthase family protein | chr5:13599416-13602240 REVERSE LENGTH=420
Medicago Medtr8g101250.1 539 75.0 85.2 | tRNA pseudouridine synthase | HC | chr8:42499859-42506686 | 20130731
Soybean Glyma08g03090.1 584 75.3 83.3  
LJGI gnl|LJGI|FS332620 1253 100.0 100.0 similar to UniRef100_A7PC02 Cluster: Chromosome chr2 scaffold_11, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_11, whole genome shotgun sequence - Vitis vinifera (Grape), partial (39%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v3014900.1 length: 390 aa.
IPR001406 Pseudouridine synthase I, TruA
method AccNumber shortName E-value location
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
HMMPanther PTHR11142 PSEUDOURIDYLATE 4.3e-46 15-385
IPR020094 Pseudouridine synthase I, TruA, N-terminal
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
Gene3D G3DSA:3.30.70.580 no description 1.8e-22 131-247
IPR020095 Pseudouridine synthase I, TruA, C-terminal
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
Gene3D G3DSA:3.30.70.660 no description 1.9e-10 248-387
IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
HMMPfam PF01416 PseudoU_synth_1 1.9e-06 135-245
IPR020103 Pseudouridine synthase, catalytic domain
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
superfamily SSF55120 Pseudouridine 1.1e-32 127-382
Wolf-PSORT
Lj4g3v3014900.1	mito 9.5, chlo_mito 7, chlo 3.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v3014900.1