Miyakogusa Predicted Gene
- Lj4g3v3014210.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7KRV8_SOYBN |
468 |
79.9 |
84.5 |
(tr|K7KRV8) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT4G10925.3 |
355 |
73.5 |
84.0 |
| Symbols: | Nuclear transport factor 2 (NTF2) family protein | chr4:6702987-6704283 REVERSE LENGTH=231 |
| Medicago |
Medtr8g099610.1 |
451 |
77.3 |
83.2 |
| nuclear transport factor 2 (NTF2) family protein | HC | chr8:42114160-42117440 | 20130731 |
| Soybean |
Glyma08g02790.1 |
451 |
78.9 |
82.8 |
|
| LJGI |
gnl|LJGI|TC74479 |
674 |
99.7 |
99.7 |
similar to UniRef100_A7QU78 Cluster: Chromosome chr2 scaffold_176, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_176, whole genome shotgun sequence - Vitis vinifera (Grape), partial (34%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v3014210.1 |
length: 284 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| ProfileScan |
PS50181 |
FBOX |
8.650 |
91-137 |
| superfamily |
SSF81383 |
F-box |
1.7e-14 |
84-195 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
2.3e-11 |
94-160 |
| Gene3D |
G3DSA:3.10.450.50 |
no description |
5.8e-39 |
161-279 |
| HMMPfam |
PF13474 |
SnoaL_3 |
7e-26 |
166-279 |
| Seg |
seg |
seg |
NA |
19-40 |
| superfamily |
SSF54427 |
NTF2-like |
5.3e-19 |
160-281 |
- Wolf-PSORT
Lj4g3v3014210.1 chlo 8, plas 2, cyto 1, mito 1, vacu 1, E.R. 1, nucl_plas 1, golg_plas 1, E.R._vacu 1, cysk_plas 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v3014210.1 |
|