Miyakogusa Predicted Gene

Lj4g3v2976880.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1KPE2_SOYBN 408 62.6 71.5 (tr|I1KPE2) Uncharacterized protein OS=Glycine max PE=3 SV=2

TAIR_pep AT4G36870.2 265 55.0 68.3 | Symbols: BLH2, SAW1 | BEL1-like homeodomain 2 | chr4:17369423-17373723 FORWARD LENGTH=739

Medicago Medtr8g098815.1 399 65.1 72.3 | BEL1-related homeotic protein | HC | chr8:41296700-41300319 | 20130731

Soybean Glyma11g02450.1 406 61.6 69.3

LJGI gnl|LJGI|FS336468 759 100.0 100.0 similar to UniRef100_Q8LLE1 Cluster: BEL1-related homeotic protein 14; n=1; Solanum tuberosum|Rep: BEL1-related homeotic protein 14 - Solanum tuberosum (Potato), partial (10%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v2976880.1 length: 348 aa.

IPR001356 Homeodomain

method AccNumber shortName E-value location

Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity

Biological Process GO:0006355 regulation of transcription, DNA-dependent

Molecular Function GO:0043565 sequence-specific DNA binding

ProfileScan PS50071 HOMEOBOX_2 10.835 293-348

IPR006563 POX

HMMPfam PF07526 POX 5.9e-39 123-243

HMMSmart SM00574 domain 6.1e-45 118-245

IPR008422 Homeobox KN domain

Molecular Function GO:0003677 DNA binding

Biological Process GO:0006355 regulation of transcription, DNA-dependent

HMMPfam PF05920 Homeobox_KN 1.4e-13 313-348

IPR009057 Homeodomain-like

Molecular Function GO:0003677 DNA binding

Gene3D G3DSA:1.10.10.60 no description 1.2e-19 299-348

superfamily SSF46689 Homeodomain-like 1.4e-12 294-348

no_ID

Coil coil coiled-coil NA 177-198

HMMPanther PTHR11850 HOMEOBOX 2.9e-90 172-348

HMMPanther PTHR11850:SF15 HOMEOBOX 2.9e-90 172-348

Seg seg seg NA 24-39
76-90
100-108
152-169

Wolf-PSORT

Lj4g3v2976880.1 nucl 13

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v2976880.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1KPE2_SOYBN	408	62.6	71.5	(tr\|I1KPE2) Uncharacterized protein OS=Glycine max PE=3 SV=2
TAIR_pep	AT4G36870.2	265	55.0	68.3	\| Symbols: BLH2, SAW1 \| BEL1-like homeodomain 2 \| chr4:17369423-17373723 FORWARD LENGTH=739
Medicago	Medtr8g098815.1	399	65.1	72.3	\| BEL1-related homeotic protein \| HC \| chr8:41296700-41300319 \| 20130731
Soybean	Glyma11g02450.1	406	61.6	69.3
LJGI	gnl\|LJGI\|FS336468	759	100.0	100.0	similar to UniRef100_Q8LLE1 Cluster: BEL1-related homeotic protein 14; n=1; Solanum tuberosum\|Rep: BEL1-related homeotic protein 14 - Solanum tuberosum (Potato), partial (10%)

IPR001356	Homeodomain
Lj4g3v2976880.1				length: 348 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003700	sequence-specific DNA binding transcription factor activity
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
Molecular Function	GO:0043565	sequence-specific DNA binding
ProfileScan	PS50071	HOMEOBOX_2	10.835	293-348
IPR006563	POX
HMMPfam	PF07526	POX	5.9e-39	123-243
HMMSmart	SM00574	domain	6.1e-45	118-245
IPR008422	Homeobox KN domain
Molecular Function	GO:0003677	DNA binding
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
HMMPfam	PF05920	Homeobox_KN	1.4e-13	313-348
IPR009057	Homeodomain-like
Molecular Function	GO:0003677	DNA binding
Gene3D	G3DSA:1.10.10.60	no description	1.2e-19	299-348
superfamily	SSF46689	Homeodomain-like	1.4e-12	294-348
no_ID
Coil	coil	coiled-coil	NA	177-198
HMMPanther	PTHR11850	HOMEOBOX	2.9e-90	172-348
HMMPanther	PTHR11850:SF15	HOMEOBOX	2.9e-90	172-348
Seg	seg	seg	NA	24-39 76-90 100-108 152-169