Miyakogusa Predicted Gene
- Lj4g3v2973630.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SXR9_LOTJA |
335 |
98.2 |
98.8 |
(tr|I3SXR9) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT1G63800.1 |
256 |
71.3 |
85.4 |
| Symbols: UBC5 | ubiquitin-conjugating enzyme 5 | chr1:23667888-23669003 REVERSE LENGTH=185 |
| Medicago |
Medtr8g028920.1 |
268 |
76.8 |
89.0 |
| ubiquitin-conjugating enzyme | HC | chr8:11259051-11262625 | 20130731 |
| Soybean |
Glyma05g37650.1 |
299 |
81.7 |
93.9 |
|
| LJGI |
gnl|LJGI|TC58135 |
936 |
99.0 |
99.0 |
similar to UniRef100_Q337R4 Cluster: Ubiquitin carrier protein; n=1; Oryza sativa Japonica Group|Rep: Ubiquitin carrier protein - Oryza sativa subsp. japonica (Rice), partial (96%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v2973630.1 |
length: 164 aa. |
| IPR000608 |
Ubiquitin-conjugating enzyme, E2 |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0016881 |
acid-amino acid ligase activity |
|
|
| HMMPfam |
PF00179 |
UQ_con |
1e-38 |
14-142 |
| ProfileScan |
PS50127 |
UBIQUITIN_CONJUGAT_2 |
32.133 |
26-137 |
| IPR016135 |
Ubiquitin-conjugating enzyme/RWD-like |
| Gene3D |
G3DSA:3.10.110.10 |
no description |
2.4e-42 |
11-148 |
| superfamily |
SSF54495 |
UBC-like |
1.5e-46 |
1-153 |
| IPR023313 |
Ubiquitin-conjugating enzyme, active site |
| PatternScan |
PS00183 |
UBIQUITIN_CONJUGAT_1 |
NA |
73-89 |
| no_ID |
|
| HMMPanther |
PTHR24067 |
UBIQUITIN-CONJUGATING |
2.5e-94 |
1-164 |
| HMMPanther |
PTHR24067:SF0 |
UBIQUITIN-CONJUGATING |
2.5e-94 |
1-164 |
| HMMSmart |
SM00212 |
Ubiquitin-conjugating |
2e-48 |
4-148 |
- Wolf-PSORT
Lj4g3v2973630.1 nucl 7, chlo 3, plas 1.5, golg_plas 1.5, cyto 1, mito 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v2973630.1 |
|