Miyakogusa Predicted Gene

Lj4g3v2951260.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7LHC6_MEDTR 862 94.7 95.8 (tr|G7LHC6) Tubulin beta chain OS=Medicago truncatula GN=MTR_8g098360 PE=3 SV=1
TAIR_pep AT5G12250.1 823 89.1 93.7 | Symbols: TUB6 | beta-6 tubulin | chr5:3961317-3962971 REVERSE LENGTH=449
Medicago Medtr8g098360.1 862 94.7 95.8 | tubulin beta-1 chain | HC | chr8:40920094-40915697 | 20130731
Soybean Glyma05g37860.1 863 94.7 96.0  
LJGI gnl|LJGI|TC61113 2644 99.9 99.9 homologue to UniRef100_A7QIW4 Cluster: Chromosome chr2 scaffold_105, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_105, whole genome shotgun sequence - Vitis vinifera (Grape), complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2951260.2 length: 445 aa.
IPR000217 Tubulin
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005874 microtubule    
Biological Process GO:0007017 microtubule-based process    
FPrintScan PR01161 TUBULIN 7.5e-106 10-30
51-70
93-104
106-130
132-150
151-172
176-189
190-210
370-398
HMMPanther PTHR11588 TUBULIN 0 1-445
IPR002453 Beta tubulin
Molecular Function GO:0005200 structural constituent of cytoskeleton    
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005874 microtubule    
FPrintScan PR01163 BETATUBULIN 3.9e-119 41-58
88-99
108-126
152-164
212-224
230-239
245-258
265-281
311-329
329-343
347-370
377-388
412-430
IPR003008 Tubulin/FtsZ, GTPase domain
Cellular Component GO:0043234 protein complex    
Biological Process GO:0051258 protein polymerization    
Gene3D G3DSA:3.40.50.1440 no description 8.6e-145 1-263
HMMPfam PF00091 Tubulin 1.9e-73 3-222
HMMSmart SM00864 Tubulin/FtsZ 1.3e-69 47-244
superfamily SSF52490 Tubulin 7.8e-105 1-243
IPR008280 Tubulin/FtsZ, C-terminal
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Cellular Component GO:0043234 protein complex    
Biological Process GO:0051258 protein polymerization    
superfamily SSF55307 Tubulin 2.4e-78 244-430
IPR013838 Beta tubulin, autoregulation binding site
PatternScan PS00228 TUBULIN_B_AUTOREG NA 1-4
IPR017975 Tubulin, conserved site
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005874 microtubule    
Biological Process GO:0007017 microtubule-based process    
PatternScan PS00227 TUBULIN NA 140-146
IPR018316 Tubulin/FtsZ, 2-layer sandwich domain
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Cellular Component GO:0043234 protein complex    
Biological Process GO:0051258 protein polymerization    
Gene3D G3DSA:3.30.1330.20 no description 4.1e-49 264-373
HMMPfam PF03953 Tubulin_C 1.2e-47 261-382
HMMSmart SM00865 Tubulin/FtsZ 1.4e-37 246-383
IPR023123 Tubulin, C-terminal
Gene3D G3DSA:1.10.287.600 no description 5.2e-32 374-430
no_ID  
Coil coil coiled-coil NA 408-443
Seg seg seg NA 138-151
432-442
Wolf-PSORT
Lj4g3v2951260.2	nucl 9, cyto 2, chlo 1, vacu 1, cysk 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2951260.2