Miyakogusa Predicted Gene

Lj4g3v2951260.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KPA1_SOYBN 593 92.5 93.8 (tr|I1KPA1) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT5G23860.2 576 88.5 92.4 | Symbols: TUB8 | tubulin beta 8 | chr5:8042962-8044528 FORWARD LENGTH=449
Medicago Medtr8g098360.1 591 92.1 93.8 | tubulin beta-1 chain | HC | chr8:40920094-40915697 | 20130731
Soybean Glyma08g01740.1 593 92.5 93.8  
LJGI gnl|LJGI|TC61113 1867 99.9 99.9 homologue to UniRef100_A7QIW4 Cluster: Chromosome chr2 scaffold_105, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_105, whole genome shotgun sequence - Vitis vinifera (Grape), complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2951260.1 length: 337 aa.
IPR000217 Tubulin
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005874 microtubule    
Biological Process GO:0007017 microtubule-based process    
FPrintScan PR01161 TUBULIN 3.3e-58 24-42
43-64
68-81
82-102
262-290
HMMPanther PTHR11588 TUBULIN 1.4e-258 24-337
IPR002453 Beta tubulin
Molecular Function GO:0005200 structural constituent of cytoskeleton    
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005874 microtubule    
FPrintScan PR01163 BETATUBULIN 2.5e-90 44-56
104-116
122-131
137-150
157-173
203-221
221-235
239-262
269-280
304-322
IPR003008 Tubulin/FtsZ, GTPase domain
Cellular Component GO:0043234 protein complex    
Biological Process GO:0051258 protein polymerization    
Gene3D G3DSA:3.40.50.1440 no description 2.1e-74 19-155
HMMPfam PF00091 Tubulin 1.5e-29 22-114
HMMSmart SM00864 Tubulin/FtsZ 3.4e-13 1-136
superfamily SSF52490 Tubulin 1.7e-45 22-135
IPR008280 Tubulin/FtsZ, C-terminal
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Cellular Component GO:0043234 protein complex    
Biological Process GO:0051258 protein polymerization    
superfamily SSF55307 Tubulin 2.4e-78 136-322
IPR017975 Tubulin, conserved site
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005874 microtubule    
Biological Process GO:0007017 microtubule-based process    
PatternScan PS00227 TUBULIN NA 32-38
IPR018316 Tubulin/FtsZ, 2-layer sandwich domain
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Cellular Component GO:0043234 protein complex    
Biological Process GO:0051258 protein polymerization    
Gene3D G3DSA:3.30.1330.20 no description 2.4e-49 156-265
HMMPfam PF03953 Tubulin_C 6.7e-48 153-274
HMMSmart SM00865 Tubulin/FtsZ 1.4e-37 138-275
IPR023123 Tubulin, C-terminal
Gene3D G3DSA:1.10.287.600 no description 3.4e-32 266-322
no_ID  
Coil coil coiled-coil NA 300-335
Seg seg seg NA 30-43
324-334
Wolf-PSORT
Lj4g3v2951260.1	nucl 10, extr 2, cyto 1, cysk 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2951260.1