Miyakogusa Predicted Gene

Lj4g3v2917670.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KP78_SOYBN 895 71.1 80.2 (tr|I1KP78) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT1G63250.1 738 66.9 81.0 | Symbols: | DEA(D/H)-box RNA helicase family protein | chr1:23463284-23466451 REVERSE LENGTH=798
Medicago Medtr8g097000.1 917 70.1 80.3 | DEAD-box ATP-dependent RNA helicase family protein | HC | chr8:40729630-40725252 | 20130731
Soybean Glyma08g01540.1 887 69.9 78.8  
LJGI gnl|LJGI|TC71902 735 100.0 100.0 similar to UniRef100_A7QKJ8 Cluster: Chromosome chr2 scaffold_112, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_112, whole genome shotgun sequence - Vitis vinifera (Grape), partial (16%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2917670.1 length: 635 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 2.8e-18 444-519
HMMSmart SM00490 helicase 2.2e-21 438-519
ProfileScan PS51194 HELICASE_CTER 17.137 414-560
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 4.5e-42 190-368
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 8.7e-49 185-396
ProfileScan PS51192 HELICASE_ATP_BIND_1 28.994 197-380
IPR014014 RNA helicase, DEAD-box type, Q motif
ProfileScan PS51195 Q_MOTIF 9.905 166-194
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 6.6e-63 241-542
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1.1e-33 157-391
392-554
HMMPanther PTHR24031 FAMILY 2.8e-256 77-635
HMMPanther PTHR24031:SF98 PUTATIVE 2.8e-256 77-635
Seg seg seg NA 17-32
84-102
511-524
Wolf-PSORT
Lj4g3v2917670.1	cyto 8, nucl 2, chlo 1, vacu 1, pero 1, golg 1, cysk_nucl 1, nucl_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2917670.1