Miyakogusa Predicted Gene
- Lj4g3v2883290.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SSW2_LOTJA |
221 |
100.0 |
100.0 |
(tr|I3SSW2) Uncharacterized protein OS=Lotus japonicus PE=4 SV=1 |
| TAIR_pep |
AT4G24990.1 |
191 |
85.3 |
91.7 |
| Symbols: ATGP4 | Ubiquitin family protein | chr4:12849973-12851249 REVERSE LENGTH=118 |
| Medicago |
Medtr8g096380.1 |
206 |
92.7 |
95.5 |
| membrane-anchored ubiquitin-fold protein 4 precursor | HC | chr8:40424096-40428190 | 20130731 |
| Soybean |
Glyma08g01320.4 |
206 |
93.6 |
97.3 |
|
| LJGI |
gnl|LJGI|TC58966 |
648 |
100.0 |
100.0 |
similar to UniRef100_A7PHL4 Cluster: Chromosome chr17 scaffold_16, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_16, whole genome shotgun sequence - Vitis vinifera (Grape), partial (96%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v2883290.2 |
length: 109 aa. |
| IPR017000 |
Membrane-anchored ubiquitin-fold protein, HCG-1 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPIR |
PIRSF032572 |
Membrane-anchored |
1.3e-54 |
1-109 |
| IPR019955 |
Ubiquitin supergroup |
| ProfileScan |
PS50053 |
UBIQUITIN_2 |
10.179 |
7-75 |
| no_ID |
|
| Gene3D |
G3DSA:3.10.20.90 |
no description |
2.5e-26 |
1-97 |
| HMMPfam |
PF13881 |
Rad60-SLD_2 |
1.4e-37 |
6-105 |
| superfamily |
SSF54236 |
Ubiquitin-like |
1.4e-22 |
1-99 |
- Wolf-PSORT
Lj4g3v2883290.2 chlo 8, cyto 2, extr 2, nucl 1, golg 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v2883290.2 |
|