Miyakogusa Predicted Gene

Lj4g3v2826700.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I3T4G7_LOTJA 294 72.6 76.7 (tr|I3T4G7) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1

TAIR_pep AT5G09260.1 248 61.1 73.6 | Symbols: VPS20.2 | vacuolar protein sorting-associated protein 20.2 | chr5:2876797-2878355 FORWARD LENGTH=216

Medicago Medtr3g096680.1 273 67.7 74.2 | vacuolar sorting-associated-like protein | HC | chr3:44247076-44243872 | 20130731

Soybean Glyma06g16240.1 286 70.7 76.3

LJGI gnl|LJGI|TC57253 1285 100.0 100.0 similar to UniRef100_A7Q6W6 Cluster: Chromosome chr12 scaffold_57, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_57, whole genome shotgun sequence - Vitis vinifera (Grape), partial (79%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v2826700.1 length: 215 aa.

IPR005024 Snf7

method AccNumber shortName E-value location

Biological Process GO:0015031 protein transport

HMMPfam PF03357 Snf7 5.3e-42 17-191

no_ID

Coil coil coiled-coil NA 14-49
50-71

HMMPanther PTHR22761 SNF7 1e-66 1-202

Seg seg seg NA 52-73
149-164

Wolf-PSORT

Lj4g3v2826700.1 cyto 6, chlo 5, nucl 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v2826700.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I3T4G7_LOTJA	294	72.6	76.7	(tr\|I3T4G7) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep	AT5G09260.1	248	61.1	73.6	\| Symbols: VPS20.2 \| vacuolar protein sorting-associated protein 20.2 \| chr5:2876797-2878355 FORWARD LENGTH=216
Medicago	Medtr3g096680.1	273	67.7	74.2	\| vacuolar sorting-associated-like protein \| HC \| chr3:44247076-44243872 \| 20130731
Soybean	Glyma06g16240.1	286	70.7	76.3
LJGI	gnl\|LJGI\|TC57253	1285	100.0	100.0	similar to UniRef100_A7Q6W6 Cluster: Chromosome chr12 scaffold_57, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr12 scaffold_57, whole genome shotgun sequence - Vitis vinifera (Grape), partial (79%)

IPR005024	Snf7
Lj4g3v2826700.1				length: 215 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0015031	protein transport
HMMPfam	PF03357	Snf7	5.3e-42	17-191
no_ID
Coil	coil	coiled-coil	NA	14-49 50-71
HMMPanther	PTHR22761	SNF7	1e-66	1-202
Seg	seg	seg	NA	52-73 149-164