Miyakogusa Predicted Gene
- Lj4g3v2821280.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SMC1_LOTJA |
419 |
99.0 |
99.5 |
(tr|I3SMC1) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT2G25950.1 |
369 |
85.2 |
93.1 |
| Symbols: | Protein of unknown function (DUF1000) | chr2:11068735-11070524 FORWARD LENGTH=204 |
| Medicago |
Medtr2g018310.1 |
393 |
91.2 |
96.1 |
| thioredoxin family Trp26 protein | HC | chr2:5760265-5755575 | 20130731 |
| Soybean |
Glyma13g29400.1 |
391 |
90.6 |
96.1 |
|
| LJGI |
gnl|LJGI|TC58225 |
1209 |
99.7 |
99.7 |
similar to UniRef100_A7P4H9 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), complete |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v2821280.1 |
length: 204 aa. |
| IPR008979 |
Galactose-binding domain-like |
| method |
AccNumber |
shortName |
E-value |
location |
| superfamily |
SSF49785 |
Galactose-binding |
1.3e-45 |
5-168 |
| IPR010400 |
PITH domain |
| Gene3D |
G3DSA:2.60.120.470 |
no description |
7.2e-50 |
12-195 |
| HMMPfam |
PF06201 |
PITH |
9.8e-43 |
19-168 |
| ProfileScan |
PS51532 |
PITH |
58.149 |
9-184 |
| no_ID |
|
| HMMPanther |
PTHR12175 |
AD039 |
6.1e-93 |
1-204 |
| HMMPanther |
PTHR12175:SF0 |
SUBFAMILY |
6.1e-93 |
1-204 |
- Wolf-PSORT
Lj4g3v2821280.1 nucl 7, cyto 2, chlo 1, plas 1, vacu 1, pero 1, cysk 1, cysk_plas 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v2821280.1 |
|