Miyakogusa Predicted Gene

Lj4g3v2775580.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7LC87_MEDTR 379 75.2 78.7 (tr|G7LC87) RNA-binding protein OS=Medicago truncatula GN=MTR_8g092550 PE=4 SV=1
TAIR_pep AT5G09880.1 284 61.9 69.2 | Symbols: | Splicing factor, CC1-like | chr5:3081646-3085179 REVERSE LENGTH=527
Medicago Medtr8g092550.1 379 75.2 78.7 | CC1-like splicing factor | HC | chr8:38688579-38694751 | 20130731
Soybean Glyma05g32080.2 357 73.5 76.3  
LJGI gnl|LJGI|TC69696 892 99.8 99.8 similar to UniRef100_A7PKX0 Cluster: Chromosome chr7 scaffold_20, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_20, whole genome shotgun sequence - Vitis vinifera (Grape), partial (34%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2775580.2 length: 271 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 7.8e-21 72-142
HMMSmart SM00360 RNA 3.5e-26 71-144
ProfileScan PS50102 RRM 18.325 70-148
IPR006509 Splicing factor, CC1-like
Molecular Function GO:0003723 RNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006397 mRNA processing    
HMMTigr TIGR01622 SF-CC1: 4e-83 1-253
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 7.6e-33 5-146
no_ID  
HMMPanther PTHR24012 FAMILY 1.6e-70 1-252
HMMPanther PTHR24012:SF39 SUBFAMILY 1.6e-70 1-252
Seg seg seg NA 50-68
154-165
226-237
superfamily SSF54928 RNA-binding 1.7e-26 1-155
Wolf-PSORT
Lj4g3v2775580.2	mito 7, chlo 2, cyto 2, nucl 1, plas 1, E.R. 1, nucl_plas 1, cyto_pero 1, E.R._plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2775580.2