Miyakogusa Predicted Gene

Lj4g3v2753030.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7LD86_MEDTR 884 83.0 90.8 (tr|G7LD86) Pectin methylesterase OS=Medicago truncatula GN=MTR_8g093460 PE=3 SV=1

TAIR_pep AT5G09760.1 694 65.5 78.8 | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr5:3032446-3034364 FORWARD LENGTH=551

Medicago Medtr8g093460.1 884 83.0 90.8 | pectinesterase/pectinesterase inhibitor | HC | chr8:39045135-39042219 | 20130731

Soybean Glyma05g32380.1 832 78.5 87.2

LJGI gnl|LJGI|TC73565 781 99.7 99.7 similar to UniRef100_A0ZNK0 Cluster: Pectin methylesterase 2; n=1; Pyrus communis|Rep: Pectin methylesterase 2 - Pyrus communis (Pear), partial (18%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v2753030.1 length: 564 aa.

IPR000070 Pectinesterase, catalytic

method AccNumber shortName E-value location

Cellular Component GO:0005618 cell wall

Molecular Function GO:0030599 pectinesterase activity

Biological Process GO:0042545 cell wall modification

HMMPfam PF01095 Pectinesterase 1.1e-122 233-537

IPR006501 Pectinesterase inhibitor

Molecular Function GO:0004857 enzyme inhibitor activity

Molecular Function GO:0030599 pectinesterase activity

Gene3D G3DSA:1.20.140.40 no description 5.9e-18 42-186

HMMPfam PF04043 PMEI 5.3e-21 40-185

HMMSmart SM00856 Plant 7.9e-24 39-185

HMMTigr TIGR01614 PME_inhib: 1.1e-15 8-183

superfamily SSF101148 Plant 6.9e-17 41-189

IPR011050 Pectin lyase fold/virulence factor

superfamily SSF51126 Pectin 2.7e-93 226-551

IPR012334 Pectin lyase fold

Gene3D G3DSA:2.160.20.10 no description 8e-111 231-544

no_ID

HMMPanther PTHR31707 FAMILY 4.3e-171 10-543

HMMPanther PTHR31707:SF0 SUBFAMILY 4.3e-171 10-543

Seg seg seg NA 2-36
547-563

Wolf-PSORT

Lj4g3v2753030.1 nucl 6, chlo 4, plas 1, extr 1, vacu 1, E.R. 1, E.R._vacu 1, E.R._plas 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v2753030.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7LD86_MEDTR	884	83.0	90.8	(tr\|G7LD86) Pectin methylesterase OS=Medicago truncatula GN=MTR_8g093460 PE=3 SV=1
TAIR_pep	AT5G09760.1	694	65.5	78.8	\| Symbols: \| Plant invertase/pectin methylesterase inhibitor superfamily \| chr5:3032446-3034364 FORWARD LENGTH=551
Medicago	Medtr8g093460.1	884	83.0	90.8	\| pectinesterase/pectinesterase inhibitor \| HC \| chr8:39045135-39042219 \| 20130731
Soybean	Glyma05g32380.1	832	78.5	87.2
LJGI	gnl\|LJGI\|TC73565	781	99.7	99.7	similar to UniRef100_A0ZNK0 Cluster: Pectin methylesterase 2; n=1; Pyrus communis\|Rep: Pectin methylesterase 2 - Pyrus communis (Pear), partial (18%)

IPR000070	Pectinesterase, catalytic
Lj4g3v2753030.1				length: 564 aa.
method	AccNumber	shortName	E-value	location
Cellular Component	GO:0005618	cell wall
Molecular Function	GO:0030599	pectinesterase activity
Biological Process	GO:0042545	cell wall modification
HMMPfam	PF01095	Pectinesterase	1.1e-122	233-537
IPR006501	Pectinesterase inhibitor
Molecular Function	GO:0004857	enzyme inhibitor activity
Molecular Function	GO:0030599	pectinesterase activity
Gene3D	G3DSA:1.20.140.40	no description	5.9e-18	42-186
HMMPfam	PF04043	PMEI	5.3e-21	40-185
HMMSmart	SM00856	Plant	7.9e-24	39-185
HMMTigr	TIGR01614	PME_inhib:	1.1e-15	8-183
superfamily	SSF101148	Plant	6.9e-17	41-189
IPR011050	Pectin lyase fold/virulence factor
superfamily	SSF51126	Pectin	2.7e-93	226-551
IPR012334	Pectin lyase fold
Gene3D	G3DSA:2.160.20.10	no description	8e-111	231-544
no_ID
HMMPanther	PTHR31707	FAMILY	4.3e-171	10-543
HMMPanther	PTHR31707:SF0	SUBFAMILY	4.3e-171	10-543
Seg	seg	seg	NA	2-36 547-563