Miyakogusa Predicted Gene

Lj4g3v2742810.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q40207_LOTJA 393 100.0 100.0 (tr|Q40207) RAB1Y (Fragment) OS=Lotus japonicus GN=rab1Y PE=2 SV=1
TAIR_pep AT1G43890.3 334 88.5 93.4 | Symbols: ATRAB18, ATRABC1, RAB18-1, RABC1, ATRAB-C1, RAB18 | RAB GTPASE HOMOLOG B18 | chr1:16646934-16648395 FORWARD LENGTH=212
Medicago Medtr8g093740.1 362 92.2 95.8 | RAB GTPase-like protein A5B | HC | chr8:39223227-39227011 | 20130731
Soybean Glyma05g32520.3 374 93.2 97.9  
LJGI gnl|LJGI|TC57210 1148 100.0 100.0 UniRef100_Q40207 Cluster: RAB1Y; n=1; Lotus japonicus|Rep: RAB1Y - Lotus japonicus, complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2742810.1 length: 192 aa.
IPR001806 Small GTPase superfamily
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
FPrintScan PR00449 RASTRNSFRMNG 9.6e-24 19-35
37-59
101-114
136-158
HMMPfam PF00071 Ras 9e-56 1-159
IPR002041 Ran GTPase
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0006913 nucleocytoplasmic transport    
Biological Process GO:0007165 signal transduction    
HMMSmart SM00176 Ran 3.5e-05 2-191
IPR003578 Small GTPase superfamily, Rho type
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMSmart SM00174 Rho 1.3e-13 2-161
IPR003579 Small GTPase superfamily, Rab type
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
Biological Process GO:0015031 protein transport    
HMMSmart SM00175 Rab 1.1e-94 1-161
IPR005225 Small GTP-binding protein domain
Molecular Function GO:0005525 GTP binding    
HMMTigr TIGR00231 small_GTP: 7.1e-29 1-153
IPR020849 Small GTPase superfamily, Ras type
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0007165 signal transduction    
Cellular Component GO:0016020 membrane    
HMMSmart SM00173 Ras 3.3e-29 1-161
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 5.7e-57 1-192
no_ID  
Gene3D G3DSA:3.40.50.300 no description 7.5e-64 1-192
HMMPanther PTHR24073 FAMILY 9.8e-117 1-192
HMMPanther PTHR24073:SF285SUBFAMILY NOT 9.8e-117 1-192
ProfileScan PS51419 RAB 31.344 1-192
Wolf-PSORT
Lj4g3v2742810.1	chlo 6, nucl 4, extr 2, cysk_nucl 2, nucl_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2742810.1