Miyakogusa Predicted Gene

Lj4g3v2690700.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SL87_LOTJA 614 94.3 94.3 (tr|I3SL87) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT4G06599.1 497 73.4 83.2 | Symbols: | ubiquitin family protein | chr4:3666079-3667495 REVERSE LENGTH=340
Medicago Medtr8g088640.1 549 81.9 88.4 | ubiquitin-like domain CTD phosphatase | HC | chr8:36805772-36808866 | 20130731
Soybean Glyma05g30160.1 556 83.6 89.9  
LJGI gnl|LJGI|TC58423 1992 100.0 100.0 similar to UniRef100_A7QCJ8 Cluster: Chromosome chr12 scaffold_78, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_78, whole genome shotgun sequence - Vitis vinifera (Grape), partial (98%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2690700.1 length: 333 aa.
IPR000626 Ubiquitin
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00240 ubiquitin 2.1e-07 25-71
HMMSmart SM00213 Ubiquitin 1.6e-10 17-90
IPR004274 NLI interacting factor
Molecular Function GO:0005515 protein binding    
HMMPfam PF03031 NIF 1.4e-25 149-311
HMMSmart SM00577 catalytic 7e-16 147-289
ProfileScan PS50969 FCP1 23.015 144-305
IPR011943 HAD-superfamily hydrolase, subfamily IIID
Molecular Function GO:0004721 phosphoprotein phosphatase activity    
Cellular Component GO:0005634 nucleus    
HMMTigr TIGR02245 HAD_IIID1: 4.1e-106 128-322
IPR019955 Ubiquitin supergroup
ProfileScan PS50053 UBIQUITIN_2 10.876 15-81
IPR023214 HAD-like domain
Gene3D G3DSA:3.40.50.1000 no description 1.2e-11 141-314
superfamily SSF56784 HAD-like 1.3e-29 134-317
no_ID  
Coil coil coiled-coil NA 119-140
Gene3D G3DSA:3.10.20.90 no description 1.6e-23 12-96
HMMPanther PTHR32054 FAMILY 1.2e-122 21-320
HMMPanther PTHR32054:SF1 SUBFAMILY 1.2e-122 21-320
Seg seg seg NA 3-16
67-83
superfamily SSF54236 Ubiquitin-like 2.3e-18 10-109
Wolf-PSORT
Lj4g3v2690700.1	cyto 7, nucl 3, chlo 1, plas 1, cysk 1, golg 1, golg_plas 1, cysk_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2690700.1